Experiment: Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_07445 and IAI46_07450 are separated by 0 nucleotides IAI46_07450 and IAI46_07455 are separated by 136 nucleotides IAI46_07455 and IAI46_07460 overlap by 42 nucleotides
IAI46_07445: IAI46_07445 - ATP-dependent DNA helicase DinG, at 1,572,939 to 1,575,137
_07445
IAI46_07450: IAI46_07450 - Lrp/AsnC family transcriptional regulator, at 1,575,138 to 1,575,572
_07450
IAI46_07455: IAI46_07455 - DMT family transporter, at 1,575,709 to 1,576,623
_07455
IAI46_07460: IAI46_07460 - DHA2 family efflux MFS transporter permease subunit, at 1,576,582 to 1,577,934
_07460
Position (kb) 1575
1576
1577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1574.768 kb on + strand, within IAI46_07445 at 1574.768 kb on + strand, within IAI46_07445 at 1574.769 kb on - strand, within IAI46_07445 at 1574.769 kb on - strand, within IAI46_07445 at 1574.861 kb on - strand, within IAI46_07445 at 1574.950 kb on - strand at 1575.065 kb on + strand at 1575.191 kb on + strand, within IAI46_07450 at 1575.191 kb on + strand, within IAI46_07450 at 1575.191 kb on + strand, within IAI46_07450 at 1575.677 kb on + strand at 1575.685 kb on + strand at 1575.685 kb on + strand at 1575.691 kb on + strand at 1575.692 kb on - strand at 1575.722 kb on + strand at 1575.904 kb on - strand, within IAI46_07455 at 1575.904 kb on - strand, within IAI46_07455 at 1575.907 kb on - strand, within IAI46_07455 at 1575.948 kb on + strand, within IAI46_07455 at 1575.974 kb on - strand, within IAI46_07455 at 1575.974 kb on - strand, within IAI46_07455 at 1576.009 kb on + strand, within IAI46_07455 at 1576.010 kb on - strand, within IAI46_07455 at 1576.010 kb on - strand, within IAI46_07455 at 1576.010 kb on - strand, within IAI46_07455 at 1576.011 kb on + strand, within IAI46_07455 at 1576.012 kb on - strand, within IAI46_07455 at 1576.078 kb on - strand, within IAI46_07455 at 1576.078 kb on - strand, within IAI46_07455 at 1576.094 kb on + strand, within IAI46_07455 at 1576.095 kb on - strand, within IAI46_07455 at 1576.162 kb on + strand, within IAI46_07455 at 1576.275 kb on - strand, within IAI46_07455 at 1576.344 kb on + strand, within IAI46_07455 at 1576.345 kb on - strand, within IAI46_07455 at 1576.345 kb on - strand, within IAI46_07455 at 1576.365 kb on - strand, within IAI46_07455 at 1576.365 kb on - strand, within IAI46_07455 at 1576.384 kb on + strand, within IAI46_07455 at 1576.384 kb on + strand, within IAI46_07455 at 1576.384 kb on + strand, within IAI46_07455 at 1576.384 kb on + strand, within IAI46_07455 at 1576.384 kb on + strand, within IAI46_07455 at 1576.384 kb on + strand, within IAI46_07455 at 1576.385 kb on - strand, within IAI46_07455 at 1576.385 kb on - strand, within IAI46_07455 at 1576.385 kb on - strand, within IAI46_07455 at 1576.385 kb on - strand, within IAI46_07455 at 1576.662 kb on - strand at 1577.048 kb on + strand, within IAI46_07460 at 1577.308 kb on + strand, within IAI46_07460 at 1577.309 kb on - strand, within IAI46_07460 at 1577.565 kb on - strand, within IAI46_07460 at 1577.565 kb on - strand, within IAI46_07460
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30 remove 1,574,768 + IAI46_07445 0.83 -0.4 1,574,768 + IAI46_07445 0.83 +1.2 1,574,769 - IAI46_07445 0.83 +0.0 1,574,769 - IAI46_07445 0.83 +0.5 1,574,861 - IAI46_07445 0.87 +2.0 1,574,950 - -0.1 1,575,065 + -0.9 1,575,191 + IAI46_07450 0.12 +2.2 1,575,191 + IAI46_07450 0.12 -0.6 1,575,191 + IAI46_07450 0.12 +0.6 1,575,677 + -0.6 1,575,685 + -0.1 1,575,685 + -1.2 1,575,691 + -0.0 1,575,692 - +1.7 1,575,722 + +0.4 1,575,904 - IAI46_07455 0.21 -0.1 1,575,904 - IAI46_07455 0.21 -0.1 1,575,907 - IAI46_07455 0.22 -1.3 1,575,948 + IAI46_07455 0.26 -0.2 1,575,974 - IAI46_07455 0.29 +1.2 1,575,974 - IAI46_07455 0.29 -0.9 1,576,009 + IAI46_07455 0.33 -0.5 1,576,010 - IAI46_07455 0.33 -0.1 1,576,010 - IAI46_07455 0.33 +1.4 1,576,010 - IAI46_07455 0.33 -1.6 1,576,011 + IAI46_07455 0.33 -0.4 1,576,012 - IAI46_07455 0.33 -1.0 1,576,078 - IAI46_07455 0.40 -1.1 1,576,078 - IAI46_07455 0.40 +0.5 1,576,094 + IAI46_07455 0.42 -0.4 1,576,095 - IAI46_07455 0.42 +0.4 1,576,162 + IAI46_07455 0.50 +0.0 1,576,275 - IAI46_07455 0.62 -1.0 1,576,344 + IAI46_07455 0.69 -3.6 1,576,345 - IAI46_07455 0.70 +0.1 1,576,345 - IAI46_07455 0.70 +0.6 1,576,365 - IAI46_07455 0.72 +0.2 1,576,365 - IAI46_07455 0.72 -1.0 1,576,384 + IAI46_07455 0.74 +0.2 1,576,384 + IAI46_07455 0.74 -1.0 1,576,384 + IAI46_07455 0.74 -1.2 1,576,384 + IAI46_07455 0.74 -1.3 1,576,384 + IAI46_07455 0.74 -0.2 1,576,384 + IAI46_07455 0.74 +1.5 1,576,385 - IAI46_07455 0.74 +1.2 1,576,385 - IAI46_07455 0.74 -1.5 1,576,385 - IAI46_07455 0.74 +0.1 1,576,385 - IAI46_07455 0.74 +0.2 1,576,662 - +0.8 1,577,048 + IAI46_07460 0.34 -0.9 1,577,308 + IAI46_07460 0.54 -1.4 1,577,309 - IAI46_07460 0.54 -0.1 1,577,565 - IAI46_07460 0.73 -0.0 1,577,565 - IAI46_07460 0.73 -0.5
Or see this region's nucleotide sequence