Experiment: Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03055 and IAI46_03060 are separated by 150 nucleotides IAI46_03060 and IAI46_03065 are separated by 123 nucleotides
IAI46_03055: IAI46_03055 - transaldolase, at 652,425 to 653,378
_03055
IAI46_03060: IAI46_03060 - molybdopterin adenylyltransferase, at 653,529 to 654,116
_03060
IAI46_03065: IAI46_03065 - MFS transporter, at 654,240 to 655,547
_03065
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 652.566 kb on + strand, within IAI46_03055 at 652.731 kb on + strand, within IAI46_03055 at 652.732 kb on - strand, within IAI46_03055 at 652.779 kb on + strand, within IAI46_03055 at 652.780 kb on - strand, within IAI46_03055 at 652.780 kb on - strand, within IAI46_03055 at 652.883 kb on + strand, within IAI46_03055 at 652.981 kb on - strand, within IAI46_03055 at 652.981 kb on - strand, within IAI46_03055 at 653.053 kb on - strand, within IAI46_03055 at 653.058 kb on + strand, within IAI46_03055 at 653.058 kb on + strand, within IAI46_03055 at 653.061 kb on + strand, within IAI46_03055 at 653.061 kb on + strand, within IAI46_03055 at 653.061 kb on + strand, within IAI46_03055 at 653.062 kb on - strand, within IAI46_03055 at 653.062 kb on - strand, within IAI46_03055 at 653.062 kb on - strand, within IAI46_03055 at 653.207 kb on + strand, within IAI46_03055 at 653.458 kb on + strand at 653.458 kb on + strand at 653.458 kb on + strand at 653.458 kb on + strand at 653.458 kb on + strand at 653.459 kb on - strand at 653.459 kb on - strand at 653.460 kb on + strand at 653.460 kb on + strand at 653.460 kb on + strand at 653.461 kb on - strand at 653.461 kb on - strand at 653.475 kb on + strand at 653.510 kb on + strand at 653.510 kb on + strand at 653.536 kb on + strand at 653.536 kb on + strand at 653.536 kb on + strand at 653.536 kb on + strand at 653.536 kb on + strand at 653.537 kb on - strand at 653.537 kb on - strand at 653.537 kb on - strand at 653.537 kb on - strand at 653.537 kb on - strand at 653.537 kb on - strand at 653.539 kb on + strand at 653.539 kb on + strand at 653.539 kb on + strand at 653.539 kb on + strand at 653.539 kb on + strand at 653.539 kb on + strand at 653.540 kb on - strand at 653.540 kb on - strand at 653.540 kb on - strand at 653.543 kb on + strand at 653.543 kb on + strand at 653.543 kb on + strand at 653.851 kb on + strand, within IAI46_03060 at 653.851 kb on + strand, within IAI46_03060 at 653.851 kb on + strand, within IAI46_03060 at 653.851 kb on + strand, within IAI46_03060 at 653.856 kb on + strand, within IAI46_03060 at 653.856 kb on + strand, within IAI46_03060 at 653.856 kb on + strand, within IAI46_03060 at 653.857 kb on - strand, within IAI46_03060 at 653.857 kb on - strand, within IAI46_03060 at 653.857 kb on - strand, within IAI46_03060 at 653.857 kb on - strand, within IAI46_03060 at 653.999 kb on + strand, within IAI46_03060 at 654.000 kb on - strand, within IAI46_03060 at 654.018 kb on + strand, within IAI46_03060 at 654.018 kb on + strand, within IAI46_03060 at 654.045 kb on + strand, within IAI46_03060 at 654.045 kb on + strand, within IAI46_03060 at 654.045 kb on + strand, within IAI46_03060 at 654.045 kb on + strand, within IAI46_03060 at 654.045 kb on + strand, within IAI46_03060 at 654.045 kb on + strand, within IAI46_03060 at 654.046 kb on - strand, within IAI46_03060 at 654.046 kb on - strand, within IAI46_03060 at 654.046 kb on - strand, within IAI46_03060 at 654.070 kb on + strand at 654.070 kb on + strand at 654.071 kb on - strand at 654.071 kb on - strand at 654.071 kb on - strand at 654.081 kb on - strand at 654.081 kb on - strand at 654.106 kb on + strand at 654.127 kb on - strand at 654.136 kb on + strand at 654.180 kb on - strand at 654.240 kb on - strand at 654.240 kb on - strand at 654.251 kb on + strand at 654.252 kb on - strand at 654.295 kb on + strand at 654.295 kb on + strand at 654.295 kb on + strand at 654.497 kb on + strand, within IAI46_03065 at 654.581 kb on + strand, within IAI46_03065 at 654.680 kb on - strand, within IAI46_03065 at 654.738 kb on - strand, within IAI46_03065 at 654.776 kb on + strand, within IAI46_03065 at 654.776 kb on + strand, within IAI46_03065 at 654.776 kb on + strand, within IAI46_03065 at 654.776 kb on + strand, within IAI46_03065 at 654.777 kb on - strand, within IAI46_03065 at 654.858 kb on + strand, within IAI46_03065 at 654.858 kb on + strand, within IAI46_03065 at 654.859 kb on - strand, within IAI46_03065 at 654.859 kb on - strand, within IAI46_03065 at 654.953 kb on + strand, within IAI46_03065 at 655.041 kb on + strand, within IAI46_03065
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30 remove 652,566 + IAI46_03055 0.15 -2.6 652,731 + IAI46_03055 0.32 -0.4 652,732 - IAI46_03055 0.32 -0.8 652,779 + IAI46_03055 0.37 -2.5 652,780 - IAI46_03055 0.37 -2.2 652,780 - IAI46_03055 0.37 -0.1 652,883 + IAI46_03055 0.48 -0.5 652,981 - IAI46_03055 0.58 -1.3 652,981 - IAI46_03055 0.58 -2.6 653,053 - IAI46_03055 0.66 -1.3 653,058 + IAI46_03055 0.66 -2.7 653,058 + IAI46_03055 0.66 +1.2 653,061 + IAI46_03055 0.67 +0.0 653,061 + IAI46_03055 0.67 -1.4 653,061 + IAI46_03055 0.67 -0.6 653,062 - IAI46_03055 0.67 +0.1 653,062 - IAI46_03055 0.67 -1.9 653,062 - IAI46_03055 0.67 +0.7 653,207 + IAI46_03055 0.82 -2.3 653,458 + -1.0 653,458 + +2.0 653,458 + -0.1 653,458 + -0.1 653,458 + -1.0 653,459 - -3.6 653,459 - +1.3 653,460 + -0.9 653,460 + +0.9 653,460 + +0.7 653,461 - -1.0 653,461 - -1.1 653,475 + +0.6 653,510 + +0.1 653,510 + -0.4 653,536 + -0.9 653,536 + -2.0 653,536 + -2.9 653,536 + +0.0 653,536 + +0.0 653,537 - +0.4 653,537 - -0.8 653,537 - +1.2 653,537 - -1.1 653,537 - -0.5 653,537 - -1.6 653,539 + -2.8 653,539 + -0.5 653,539 + +0.7 653,539 + +0.4 653,539 + +1.0 653,539 + -0.4 653,540 - +0.6 653,540 - -0.6 653,540 - +0.5 653,543 + -1.4 653,543 + -1.0 653,543 + -0.3 653,851 + IAI46_03060 0.55 -0.8 653,851 + IAI46_03060 0.55 -1.1 653,851 + IAI46_03060 0.55 -1.3 653,851 + IAI46_03060 0.55 -1.0 653,856 + IAI46_03060 0.56 -1.5 653,856 + IAI46_03060 0.56 +0.7 653,856 + IAI46_03060 0.56 -2.1 653,857 - IAI46_03060 0.56 -0.3 653,857 - IAI46_03060 0.56 -0.4 653,857 - IAI46_03060 0.56 +1.2 653,857 - IAI46_03060 0.56 -1.5 653,999 + IAI46_03060 0.80 +0.5 654,000 - IAI46_03060 0.80 -1.0 654,018 + IAI46_03060 0.83 -1.3 654,018 + IAI46_03060 0.83 +0.7 654,045 + IAI46_03060 0.88 -1.5 654,045 + IAI46_03060 0.88 +0.2 654,045 + IAI46_03060 0.88 -0.0 654,045 + IAI46_03060 0.88 -1.0 654,045 + IAI46_03060 0.88 -1.3 654,045 + IAI46_03060 0.88 +0.6 654,046 - IAI46_03060 0.88 +0.1 654,046 - IAI46_03060 0.88 -0.0 654,046 - IAI46_03060 0.88 -0.3 654,070 + -0.9 654,070 + +1.2 654,071 - +1.3 654,071 - -0.0 654,071 - +0.5 654,081 - -1.7 654,081 - +0.2 654,106 + -0.5 654,127 - -1.1 654,136 + -0.8 654,180 - -3.0 654,240 - -0.8 654,240 - +1.4 654,251 + +1.3 654,252 - -1.7 654,295 + +2.2 654,295 + +0.3 654,295 + +0.7 654,497 + IAI46_03065 0.20 -0.7 654,581 + IAI46_03065 0.26 +1.6 654,680 - IAI46_03065 0.34 -0.3 654,738 - IAI46_03065 0.38 +0.4 654,776 + IAI46_03065 0.41 -0.7 654,776 + IAI46_03065 0.41 -0.2 654,776 + IAI46_03065 0.41 -0.8 654,776 + IAI46_03065 0.41 -0.4 654,777 - IAI46_03065 0.41 -2.2 654,858 + IAI46_03065 0.47 -0.3 654,858 + IAI46_03065 0.47 +1.2 654,859 - IAI46_03065 0.47 -0.7 654,859 - IAI46_03065 0.47 -0.8 654,953 + IAI46_03065 0.55 +1.7 655,041 + IAI46_03065 0.61 -2.3
Or see this region's nucleotide sequence