Experiment: Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02560 and IAI46_02565 are separated by 258 nucleotides IAI46_02565 and IAI46_02570 are separated by 104 nucleotides IAI46_02570 and IAI46_02575 are separated by 37 nucleotides
IAI46_02560: IAI46_02560 - glutamine synthetase, at 552,197 to 553,576
_02560
IAI46_02565: IAI46_02565 - hypothetical protein, at 553,835 to 554,149
_02565
IAI46_02570: IAI46_02570 - helix-turn-helix transcriptional regulator, at 554,254 to 554,553
_02570
IAI46_02575: IAI46_02575 - YncE family protein, at 554,591 to 555,667
_02575
Position (kb) 553
554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 552.918 kb on + strand, within IAI46_02560 at 552.919 kb on - strand, within IAI46_02560 at 553.089 kb on + strand, within IAI46_02560 at 553.089 kb on + strand, within IAI46_02560 at 553.090 kb on - strand, within IAI46_02560 at 553.122 kb on + strand, within IAI46_02560 at 553.353 kb on + strand, within IAI46_02560 at 553.354 kb on - strand, within IAI46_02560 at 553.354 kb on - strand, within IAI46_02560 at 553.354 kb on - strand, within IAI46_02560 at 553.371 kb on + strand, within IAI46_02560 at 553.372 kb on - strand, within IAI46_02560 at 553.372 kb on - strand, within IAI46_02560 at 553.382 kb on - strand, within IAI46_02560 at 553.449 kb on + strand at 553.449 kb on + strand at 553.484 kb on + strand at 553.484 kb on + strand at 553.484 kb on + strand at 553.485 kb on - strand at 553.485 kb on - strand at 553.488 kb on + strand at 553.488 kb on + strand at 553.488 kb on + strand at 553.489 kb on - strand at 553.535 kb on - strand at 553.562 kb on - strand at 553.562 kb on - strand at 553.567 kb on + strand at 553.633 kb on - strand at 553.657 kb on - strand at 553.675 kb on + strand at 553.675 kb on + strand at 553.675 kb on + strand at 553.675 kb on + strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.684 kb on + strand at 553.685 kb on - strand at 553.710 kb on - strand at 553.721 kb on - strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.753 kb on - strand at 553.753 kb on - strand at 553.786 kb on - strand at 553.786 kb on - strand at 553.797 kb on + strand at 553.797 kb on + strand at 553.797 kb on + strand at 553.797 kb on + strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.800 kb on - strand at 553.800 kb on - strand at 553.817 kb on + strand at 553.834 kb on - strand at 553.995 kb on - strand, within IAI46_02565 at 553.995 kb on - strand, within IAI46_02565 at 554.059 kb on + strand, within IAI46_02565 at 554.059 kb on + strand, within IAI46_02565 at 554.060 kb on - strand, within IAI46_02565 at 554.148 kb on - strand at 554.227 kb on - strand at 554.236 kb on + strand at 554.236 kb on + strand at 554.248 kb on - strand at 554.248 kb on - strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.295 kb on + strand, within IAI46_02570 at 554.296 kb on - strand, within IAI46_02570 at 554.296 kb on - strand, within IAI46_02570 at 554.296 kb on - strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.373 kb on + strand, within IAI46_02570 at 554.373 kb on + strand, within IAI46_02570 at 554.407 kb on - strand, within IAI46_02570 at 554.407 kb on - strand, within IAI46_02570 at 554.432 kb on + strand, within IAI46_02570 at 554.432 kb on + strand, within IAI46_02570 at 554.469 kb on - strand, within IAI46_02570 at 554.476 kb on + strand, within IAI46_02570 at 554.745 kb on + strand, within IAI46_02575 at 554.745 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.917 kb on + strand, within IAI46_02575 at 554.918 kb on - strand, within IAI46_02575 at 554.918 kb on - strand, within IAI46_02575 at 555.022 kb on + strand, within IAI46_02575 at 555.055 kb on - strand, within IAI46_02575 at 555.096 kb on + strand, within IAI46_02575 at 555.096 kb on + strand, within IAI46_02575 at 555.097 kb on - strand, within IAI46_02575 at 555.118 kb on + strand, within IAI46_02575 at 555.118 kb on + strand, within IAI46_02575 at 555.119 kb on - strand, within IAI46_02575 at 555.119 kb on - strand, within IAI46_02575 at 555.146 kb on + strand, within IAI46_02575
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30 remove 552,918 + IAI46_02560 0.52 -2.3 552,919 - IAI46_02560 0.52 +0.7 553,089 + IAI46_02560 0.65 +1.2 553,089 + IAI46_02560 0.65 -0.3 553,090 - IAI46_02560 0.65 +1.4 553,122 + IAI46_02560 0.67 +0.1 553,353 + IAI46_02560 0.84 +0.5 553,354 - IAI46_02560 0.84 -1.5 553,354 - IAI46_02560 0.84 -0.2 553,354 - IAI46_02560 0.84 +0.4 553,371 + IAI46_02560 0.85 +0.4 553,372 - IAI46_02560 0.85 -1.8 553,372 - IAI46_02560 0.85 +0.5 553,382 - IAI46_02560 0.86 +0.8 553,449 + -1.5 553,449 + -1.9 553,484 + -1.9 553,484 + +1.0 553,484 + -0.5 553,485 - +0.1 553,485 - +1.4 553,488 + -1.9 553,488 + +0.5 553,488 + -1.1 553,489 - +1.5 553,535 - +0.5 553,562 - +2.0 553,562 - +0.2 553,567 + -1.1 553,633 - -1.3 553,657 - -0.9 553,675 + -0.7 553,675 + -0.2 553,675 + -1.4 553,675 + -0.3 553,676 - -1.7 553,676 - +1.5 553,676 - +0.3 553,676 - -0.7 553,676 - +0.0 553,676 - +2.5 553,676 - -1.3 553,676 - +0.6 553,676 - -0.7 553,684 + -0.9 553,685 - -0.7 553,710 - -1.3 553,721 - +0.7 553,752 + +1.4 553,752 + +0.4 553,752 + -0.2 553,752 + +0.1 553,752 + +0.1 553,752 + +4.0 553,752 + -1.7 553,753 - +1.4 553,753 - -1.0 553,786 - +1.1 553,786 - -0.2 553,797 + +0.8 553,797 + +0.5 553,797 + +0.8 553,797 + +1.6 553,798 - +2.6 553,798 - +0.9 553,798 - +0.4 553,798 - +0.9 553,798 - -1.0 553,798 - +1.0 553,799 + -0.0 553,799 + -0.6 553,799 + -2.0 553,799 + -0.6 553,799 + +0.4 553,800 - -1.4 553,800 - -0.2 553,817 + -1.3 553,834 - -2.7 553,995 - IAI46_02565 0.51 -1.8 553,995 - IAI46_02565 0.51 -0.8 554,059 + IAI46_02565 0.71 +0.4 554,059 + IAI46_02565 0.71 -0.1 554,060 - IAI46_02565 0.71 -0.0 554,148 - +0.7 554,227 - +0.8 554,236 + +0.6 554,236 + -1.2 554,248 - +0.1 554,248 - +0.8 554,251 + +0.5 554,251 + +0.3 554,251 + -0.2 554,251 + +0.5 554,251 + -2.3 554,251 + +1.2 554,251 + -2.6 554,252 - -2.0 554,252 - +0.3 554,252 - +1.4 554,252 - -0.1 554,252 - -1.3 554,252 - +0.0 554,295 + IAI46_02570 0.14 -1.3 554,296 - IAI46_02570 0.14 +1.2 554,296 - IAI46_02570 0.14 -1.2 554,296 - IAI46_02570 0.14 -0.4 554,348 + IAI46_02570 0.31 +0.3 554,348 + IAI46_02570 0.31 +0.3 554,348 + IAI46_02570 0.31 +0.3 554,348 + IAI46_02570 0.31 -0.1 554,349 - IAI46_02570 0.32 +0.5 554,349 - IAI46_02570 0.32 +1.7 554,349 - IAI46_02570 0.32 -0.4 554,349 - IAI46_02570 0.32 +1.0 554,350 + IAI46_02570 0.32 -1.7 554,350 + IAI46_02570 0.32 -0.4 554,350 + IAI46_02570 0.32 +1.0 554,350 + IAI46_02570 0.32 -0.3 554,350 + IAI46_02570 0.32 +0.9 554,350 + IAI46_02570 0.32 +0.2 554,351 - IAI46_02570 0.32 -0.2 554,351 - IAI46_02570 0.32 -2.1 554,351 - IAI46_02570 0.32 -0.6 554,351 - IAI46_02570 0.32 -1.5 554,373 + IAI46_02570 0.40 -1.1 554,373 + IAI46_02570 0.40 +1.0 554,407 - IAI46_02570 0.51 +3.0 554,407 - IAI46_02570 0.51 -0.2 554,432 + IAI46_02570 0.59 +0.7 554,432 + IAI46_02570 0.59 -0.9 554,469 - IAI46_02570 0.72 -1.2 554,476 + IAI46_02570 0.74 -0.6 554,745 + IAI46_02575 0.14 -0.2 554,745 + IAI46_02575 0.14 -1.5 554,796 + IAI46_02575 0.19 -2.1 554,796 + IAI46_02575 0.19 +0.4 554,796 + IAI46_02575 0.19 -2.2 554,796 + IAI46_02575 0.19 -0.6 554,796 + IAI46_02575 0.19 -0.0 554,796 + IAI46_02575 0.19 +1.1 554,797 - IAI46_02575 0.19 -1.1 554,797 - IAI46_02575 0.19 +0.4 554,797 - IAI46_02575 0.19 -0.3 554,797 - IAI46_02575 0.19 -1.9 554,797 - IAI46_02575 0.19 +0.3 554,797 - IAI46_02575 0.19 -0.3 554,797 - IAI46_02575 0.19 -2.1 554,797 - IAI46_02575 0.19 -0.9 554,797 - IAI46_02575 0.19 +1.7 554,797 - IAI46_02575 0.19 -2.8 554,797 - IAI46_02575 0.19 -1.1 554,917 + IAI46_02575 0.30 +0.0 554,918 - IAI46_02575 0.30 -2.1 554,918 - IAI46_02575 0.30 -0.1 555,022 + IAI46_02575 0.40 +0.9 555,055 - IAI46_02575 0.43 +0.4 555,096 + IAI46_02575 0.47 -1.2 555,096 + IAI46_02575 0.47 -2.3 555,097 - IAI46_02575 0.47 -1.8 555,118 + IAI46_02575 0.49 -1.3 555,118 + IAI46_02575 0.49 +0.1 555,119 - IAI46_02575 0.49 +1.6 555,119 - IAI46_02575 0.49 -0.2 555,146 + IAI46_02575 0.52 -1.0
Or see this region's nucleotide sequence