Strain Fitness in Serratia liquefaciens MT49 around IAI46_01460

Experiment: Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01450 and IAI46_01455 are separated by 553 nucleotidesIAI46_01455 and IAI46_01460 are separated by 159 nucleotidesIAI46_01460 and IAI46_01465 are separated by 40 nucleotides IAI46_01450: IAI46_01450 - TMAO reductase system sensor histidine kinase/response regulator TorS, at 321,072 to 323,813 _01450 IAI46_01455: IAI46_01455 - tRNA-Phe, at 324,367 to 324,442 _01455 IAI46_01460: IAI46_01460 - transcriptional regulator, at 324,602 to 325,177 _01460 IAI46_01465: IAI46_01465 - protein-disulfide reductase DsbD, at 325,218 to 326,927 _01465 Position (kb) 324 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 323.603 kb on + strandat 323.663 kb on + strandat 323.664 kb on - strandat 323.811 kb on + strandat 323.812 kb on - strandat 323.812 kb on - strandat 323.812 kb on - strandat 324.032 kb on - strandat 324.032 kb on - strandat 324.206 kb on + strandat 324.362 kb on - strandat 324.362 kb on - strandat 324.366 kb on - strandat 324.462 kb on + strandat 324.565 kb on + strandat 324.565 kb on + strandat 324.566 kb on - strandat 324.608 kb on + strandat 324.608 kb on + strandat 324.609 kb on - strandat 324.675 kb on - strand, within IAI46_01460at 324.696 kb on - strand, within IAI46_01460at 324.751 kb on + strand, within IAI46_01460at 324.838 kb on + strand, within IAI46_01460at 324.838 kb on + strand, within IAI46_01460at 324.865 kb on + strand, within IAI46_01460at 324.865 kb on + strand, within IAI46_01460at 324.866 kb on - strand, within IAI46_01460at 324.908 kb on + strand, within IAI46_01460at 324.908 kb on + strand, within IAI46_01460at 324.908 kb on + strand, within IAI46_01460at 324.909 kb on - strand, within IAI46_01460at 324.909 kb on - strand, within IAI46_01460at 324.909 kb on - strand, within IAI46_01460at 324.909 kb on - strand, within IAI46_01460at 324.912 kb on + strand, within IAI46_01460at 324.913 kb on - strand, within IAI46_01460at 324.931 kb on - strand, within IAI46_01460at 325.015 kb on - strand, within IAI46_01460at 325.029 kb on + strand, within IAI46_01460at 325.030 kb on - strand, within IAI46_01460at 325.063 kb on + strand, within IAI46_01460at 325.080 kb on - strand, within IAI46_01460at 325.080 kb on - strand, within IAI46_01460at 325.106 kb on + strand, within IAI46_01460at 325.107 kb on - strand, within IAI46_01460at 325.107 kb on - strand, within IAI46_01460at 325.215 kb on + strandat 325.216 kb on - strandat 325.216 kb on - strandat 325.216 kb on - strandat 325.219 kb on + strandat 325.219 kb on + strandat 325.219 kb on + strandat 325.220 kb on - strandat 325.220 kb on - strandat 325.220 kb on - strandat 325.228 kb on - strandat 325.265 kb on + strandat 325.265 kb on + strandat 325.266 kb on - strandat 325.422 kb on - strand, within IAI46_01465at 325.442 kb on + strand, within IAI46_01465at 325.442 kb on + strand, within IAI46_01465at 325.442 kb on + strand, within IAI46_01465at 325.442 kb on + strand, within IAI46_01465at 325.442 kb on + strand, within IAI46_01465at 325.443 kb on - strand, within IAI46_01465at 325.443 kb on - strand, within IAI46_01465at 325.443 kb on - strand, within IAI46_01465at 325.443 kb on - strand, within IAI46_01465at 325.451 kb on - strand, within IAI46_01465at 325.451 kb on - strand, within IAI46_01465at 325.490 kb on - strand, within IAI46_01465at 325.490 kb on - strand, within IAI46_01465at 325.512 kb on - strand, within IAI46_01465at 325.554 kb on - strand, within IAI46_01465at 325.657 kb on - strand, within IAI46_01465at 325.657 kb on - strand, within IAI46_01465at 325.659 kb on + strand, within IAI46_01465at 325.659 kb on + strand, within IAI46_01465at 325.659 kb on + strand, within IAI46_01465at 325.659 kb on + strand, within IAI46_01465at 325.659 kb on + strand, within IAI46_01465at 325.660 kb on - strand, within IAI46_01465at 325.660 kb on - strand, within IAI46_01465at 325.660 kb on - strand, within IAI46_01465at 325.660 kb on - strand, within IAI46_01465at 325.660 kb on - strand, within IAI46_01465at 325.703 kb on + strand, within IAI46_01465at 325.837 kb on + strand, within IAI46_01465at 325.837 kb on + strand, within IAI46_01465at 325.838 kb on - strand, within IAI46_01465at 325.838 kb on - strand, within IAI46_01465at 325.838 kb on - strand, within IAI46_01465at 325.838 kb on - strand, within IAI46_01465at 325.838 kb on - strand, within IAI46_01465at 325.838 kb on - strand, within IAI46_01465at 325.914 kb on + strand, within IAI46_01465at 325.914 kb on + strand, within IAI46_01465at 325.915 kb on - strand, within IAI46_01465at 325.915 kb on - strand, within IAI46_01465at 325.915 kb on - strand, within IAI46_01465at 325.921 kb on + strand, within IAI46_01465at 325.921 kb on + strand, within IAI46_01465at 325.922 kb on - strand, within IAI46_01465at 325.922 kb on - strand, within IAI46_01465at 325.922 kb on - strand, within IAI46_01465at 325.927 kb on + strand, within IAI46_01465at 325.928 kb on - strand, within IAI46_01465at 325.928 kb on - strand, within IAI46_01465at 325.934 kb on + strand, within IAI46_01465at 325.935 kb on - strand, within IAI46_01465at 325.952 kb on + strand, within IAI46_01465at 325.952 kb on + strand, within IAI46_01465at 325.952 kb on + strand, within IAI46_01465at 325.952 kb on + strand, within IAI46_01465at 325.952 kb on + strand, within IAI46_01465at 325.952 kb on + strand, within IAI46_01465at 325.953 kb on - strand, within IAI46_01465at 325.955 kb on + strand, within IAI46_01465at 325.972 kb on + strand, within IAI46_01465at 325.973 kb on - strand, within IAI46_01465at 325.973 kb on - strand, within IAI46_01465at 325.973 kb on - strand, within IAI46_01465at 326.003 kb on + strand, within IAI46_01465at 326.004 kb on - strand, within IAI46_01465at 326.004 kb on - strand, within IAI46_01465at 326.004 kb on - strand, within IAI46_01465at 326.128 kb on + strand, within IAI46_01465at 326.128 kb on + strand, within IAI46_01465at 326.129 kb on - strand, within IAI46_01465at 326.129 kb on - strand, within IAI46_01465at 326.129 kb on - strand, within IAI46_01465at 326.129 kb on - strand, within IAI46_01465at 326.159 kb on + strand, within IAI46_01465

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30
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323,603 + +1.6
323,663 + -0.9
323,664 - -0.9
323,811 + +0.3
323,812 - +0.8
323,812 - +0.5
323,812 - +0.8
324,032 - -0.8
324,032 - +1.4
324,206 + +0.1
324,362 - +1.1
324,362 - -0.1
324,366 - +2.0
324,462 + -2.5
324,565 + +1.3
324,565 + +0.4
324,566 - +0.8
324,608 + -2.0
324,608 + +1.4
324,609 - -0.3
324,675 - IAI46_01460 0.13 +0.3
324,696 - IAI46_01460 0.16 -0.7
324,751 + IAI46_01460 0.26 -0.2
324,838 + IAI46_01460 0.41 -1.6
324,838 + IAI46_01460 0.41 +0.9
324,865 + IAI46_01460 0.46 -2.0
324,865 + IAI46_01460 0.46 -0.4
324,866 - IAI46_01460 0.46 -1.9
324,908 + IAI46_01460 0.53 +0.3
324,908 + IAI46_01460 0.53 -0.2
324,908 + IAI46_01460 0.53 -0.9
324,909 - IAI46_01460 0.53 -0.7
324,909 - IAI46_01460 0.53 +0.4
324,909 - IAI46_01460 0.53 +1.1
324,909 - IAI46_01460 0.53 -0.6
324,912 + IAI46_01460 0.54 +0.3
324,913 - IAI46_01460 0.54 +0.6
324,931 - IAI46_01460 0.57 -0.1
325,015 - IAI46_01460 0.72 -1.9
325,029 + IAI46_01460 0.74 +0.1
325,030 - IAI46_01460 0.74 +0.8
325,063 + IAI46_01460 0.80 -0.4
325,080 - IAI46_01460 0.83 +1.3
325,080 - IAI46_01460 0.83 +0.5
325,106 + IAI46_01460 0.88 -0.3
325,107 - IAI46_01460 0.88 +1.3
325,107 - IAI46_01460 0.88 +0.8
325,215 + +1.1
325,216 - +0.3
325,216 - +0.2
325,216 - -1.4
325,219 + +0.7
325,219 + -1.4
325,219 + -1.0
325,220 - +0.6
325,220 - +1.7
325,220 - +0.7
325,228 - -0.0
325,265 + -0.2
325,265 + +0.5
325,266 - +0.6
325,422 - IAI46_01465 0.12 -2.8
325,442 + IAI46_01465 0.13 +0.2
325,442 + IAI46_01465 0.13 -1.7
325,442 + IAI46_01465 0.13 +0.1
325,442 + IAI46_01465 0.13 +0.1
325,442 + IAI46_01465 0.13 -1.6
325,443 - IAI46_01465 0.13 -1.2
325,443 - IAI46_01465 0.13 +0.5
325,443 - IAI46_01465 0.13 +0.2
325,443 - IAI46_01465 0.13 -0.2
325,451 - IAI46_01465 0.14 -2.0
325,451 - IAI46_01465 0.14 +0.4
325,490 - IAI46_01465 0.16 +0.2
325,490 - IAI46_01465 0.16 +4.1
325,512 - IAI46_01465 0.17 +0.4
325,554 - IAI46_01465 0.20 +1.3
325,657 - IAI46_01465 0.26 -0.6
325,657 - IAI46_01465 0.26 -0.0
325,659 + IAI46_01465 0.26 -1.4
325,659 + IAI46_01465 0.26 +0.2
325,659 + IAI46_01465 0.26 -0.2
325,659 + IAI46_01465 0.26 +2.0
325,659 + IAI46_01465 0.26 +3.5
325,660 - IAI46_01465 0.26 -0.2
325,660 - IAI46_01465 0.26 -0.8
325,660 - IAI46_01465 0.26 -0.1
325,660 - IAI46_01465 0.26 -1.3
325,660 - IAI46_01465 0.26 -0.1
325,703 + IAI46_01465 0.28 +0.6
325,837 + IAI46_01465 0.36 -0.2
325,837 + IAI46_01465 0.36 -1.3
325,838 - IAI46_01465 0.36 -0.0
325,838 - IAI46_01465 0.36 +0.6
325,838 - IAI46_01465 0.36 -0.4
325,838 - IAI46_01465 0.36 -0.7
325,838 - IAI46_01465 0.36 -1.5
325,838 - IAI46_01465 0.36 +3.4
325,914 + IAI46_01465 0.41 +0.7
325,914 + IAI46_01465 0.41 -0.2
325,915 - IAI46_01465 0.41 -0.8
325,915 - IAI46_01465 0.41 +0.5
325,915 - IAI46_01465 0.41 +2.0
325,921 + IAI46_01465 0.41 +0.5
325,921 + IAI46_01465 0.41 +2.9
325,922 - IAI46_01465 0.41 +1.6
325,922 - IAI46_01465 0.41 -2.0
325,922 - IAI46_01465 0.41 +2.4
325,927 + IAI46_01465 0.41 -1.2
325,928 - IAI46_01465 0.42 +1.7
325,928 - IAI46_01465 0.42 +0.0
325,934 + IAI46_01465 0.42 +0.6
325,935 - IAI46_01465 0.42 +0.2
325,952 + IAI46_01465 0.43 -0.3
325,952 + IAI46_01465 0.43 -0.6
325,952 + IAI46_01465 0.43 +0.5
325,952 + IAI46_01465 0.43 +1.3
325,952 + IAI46_01465 0.43 +0.8
325,952 + IAI46_01465 0.43 -0.2
325,953 - IAI46_01465 0.43 -1.0
325,955 + IAI46_01465 0.43 -0.1
325,972 + IAI46_01465 0.44 +2.8
325,973 - IAI46_01465 0.44 +1.0
325,973 - IAI46_01465 0.44 -2.3
325,973 - IAI46_01465 0.44 +1.0
326,003 + IAI46_01465 0.46 +0.1
326,004 - IAI46_01465 0.46 -2.0
326,004 - IAI46_01465 0.46 +1.0
326,004 - IAI46_01465 0.46 +0.9
326,128 + IAI46_01465 0.53 -1.2
326,128 + IAI46_01465 0.53 -0.9
326,129 - IAI46_01465 0.53 +1.2
326,129 - IAI46_01465 0.53 +1.9
326,129 - IAI46_01465 0.53 +2.3
326,129 - IAI46_01465 0.53 -3.1
326,159 + IAI46_01465 0.55 +1.3

Or see this region's nucleotide sequence