Experiment: Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_04530 and IAI46_04535 are separated by 111 nucleotides IAI46_04535 and IAI46_04540 are separated by 9 nucleotides IAI46_04540 and IAI46_04545 are separated by 106 nucleotides IAI46_04545 and IAI46_04550 are separated by 133 nucleotides
IAI46_04530: IAI46_04530 - DUF2501 domain-containing protein, at 978,005 to 978,490
_04530
IAI46_04535: IAI46_04535 - DUF333 domain-containing protein, at 978,602 to 978,865
_04535
IAI46_04540: IAI46_04540 - hypothetical protein, at 978,875 to 979,492
_04540
IAI46_04545: IAI46_04545 - transporter, at 979,599 to 980,288
_04545
IAI46_04550: IAI46_04550 - DeoR/GlpR transcriptional regulator, at 980,422 to 981,189
_04550
Position (kb) 978
979
980 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 978.172 kb on - strand, within IAI46_04530 at 978.237 kb on - strand, within IAI46_04530 at 978.250 kb on + strand, within IAI46_04530 at 978.592 kb on + strand at 978.593 kb on - strand at 978.648 kb on + strand, within IAI46_04535 at 978.648 kb on + strand, within IAI46_04535 at 978.670 kb on + strand, within IAI46_04535 at 978.696 kb on + strand, within IAI46_04535 at 978.731 kb on + strand, within IAI46_04535 at 978.731 kb on + strand, within IAI46_04535 at 978.732 kb on - strand, within IAI46_04535 at 978.732 kb on - strand, within IAI46_04535 at 978.785 kb on + strand, within IAI46_04535 at 978.796 kb on + strand, within IAI46_04535 at 978.796 kb on + strand, within IAI46_04535 at 978.797 kb on - strand, within IAI46_04535 at 978.903 kb on + strand at 978.903 kb on + strand at 978.989 kb on - strand, within IAI46_04540 at 979.023 kb on + strand, within IAI46_04540 at 979.023 kb on + strand, within IAI46_04540 at 979.024 kb on - strand, within IAI46_04540 at 979.024 kb on - strand, within IAI46_04540 at 979.051 kb on + strand, within IAI46_04540 at 979.051 kb on + strand, within IAI46_04540 at 979.308 kb on + strand, within IAI46_04540 at 979.362 kb on + strand, within IAI46_04540 at 979.399 kb on + strand, within IAI46_04540 at 979.400 kb on - strand, within IAI46_04540 at 979.466 kb on + strand at 979.549 kb on - strand at 979.573 kb on + strand at 979.573 kb on + strand at 979.574 kb on - strand at 979.585 kb on - strand at 979.676 kb on + strand, within IAI46_04545 at 979.677 kb on - strand, within IAI46_04545 at 979.677 kb on - strand, within IAI46_04545 at 979.720 kb on + strand, within IAI46_04545 at 979.720 kb on + strand, within IAI46_04545 at 979.720 kb on + strand, within IAI46_04545 at 979.721 kb on - strand, within IAI46_04545 at 979.721 kb on - strand, within IAI46_04545 at 979.800 kb on - strand, within IAI46_04545 at 979.800 kb on - strand, within IAI46_04545 at 979.876 kb on - strand, within IAI46_04545 at 979.991 kb on + strand, within IAI46_04545 at 979.992 kb on - strand, within IAI46_04545 at 979.997 kb on + strand, within IAI46_04545 at 979.997 kb on + strand, within IAI46_04545 at 980.076 kb on + strand, within IAI46_04545 at 980.077 kb on - strand, within IAI46_04545 at 980.263 kb on - strand at 980.267 kb on + strand at 980.267 kb on + strand at 980.268 kb on - strand at 980.268 kb on - strand at 980.269 kb on + strand at 980.269 kb on + strand at 980.269 kb on + strand at 980.269 kb on + strand at 980.270 kb on - strand at 980.270 kb on - strand at 980.292 kb on + strand at 980.293 kb on - strand at 980.301 kb on - strand at 980.301 kb on - strand at 980.312 kb on - strand at 980.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30 remove 978,172 - IAI46_04530 0.34 -1.8 978,237 - IAI46_04530 0.48 +1.8 978,250 + IAI46_04530 0.50 +1.0 978,592 + -0.7 978,593 - +0.3 978,648 + IAI46_04535 0.17 +0.8 978,648 + IAI46_04535 0.17 -1.2 978,670 + IAI46_04535 0.26 -0.6 978,696 + IAI46_04535 0.36 -1.2 978,731 + IAI46_04535 0.49 -0.5 978,731 + IAI46_04535 0.49 -0.4 978,732 - IAI46_04535 0.49 -2.7 978,732 - IAI46_04535 0.49 +2.4 978,785 + IAI46_04535 0.69 +0.6 978,796 + IAI46_04535 0.73 -1.7 978,796 + IAI46_04535 0.73 +0.7 978,797 - IAI46_04535 0.74 +0.2 978,903 + +0.1 978,903 + -1.1 978,989 - IAI46_04540 0.18 -0.4 979,023 + IAI46_04540 0.24 -1.2 979,023 + IAI46_04540 0.24 +0.2 979,024 - IAI46_04540 0.24 -0.2 979,024 - IAI46_04540 0.24 +1.0 979,051 + IAI46_04540 0.28 -0.1 979,051 + IAI46_04540 0.28 -1.5 979,308 + IAI46_04540 0.70 -2.4 979,362 + IAI46_04540 0.79 -0.2 979,399 + IAI46_04540 0.85 -0.1 979,400 - IAI46_04540 0.85 -1.5 979,466 + +0.2 979,549 - +0.3 979,573 + +1.4 979,573 + +1.1 979,574 - -0.4 979,585 - -1.3 979,676 + IAI46_04545 0.11 +0.7 979,677 - IAI46_04545 0.11 -0.9 979,677 - IAI46_04545 0.11 -0.5 979,720 + IAI46_04545 0.18 -1.4 979,720 + IAI46_04545 0.18 +1.1 979,720 + IAI46_04545 0.18 -0.7 979,721 - IAI46_04545 0.18 +1.5 979,721 - IAI46_04545 0.18 +2.5 979,800 - IAI46_04545 0.29 -0.3 979,800 - IAI46_04545 0.29 -1.8 979,876 - IAI46_04545 0.40 +0.9 979,991 + IAI46_04545 0.57 +1.2 979,992 - IAI46_04545 0.57 +0.7 979,997 + IAI46_04545 0.58 -0.6 979,997 + IAI46_04545 0.58 +0.2 980,076 + IAI46_04545 0.69 +3.1 980,077 - IAI46_04545 0.69 +1.8 980,263 - -0.0 980,267 + -0.9 980,267 + -0.4 980,268 - -0.8 980,268 - +0.7 980,269 + -1.8 980,269 + -0.4 980,269 + -1.0 980,269 + -0.1 980,270 - -1.2 980,270 - -0.7 980,292 + -0.2 980,293 - +0.2 980,301 - +0.1 980,301 - -1.1 980,312 - -1.6 980,466 + -0.5
Or see this region's nucleotide sequence