Experiment: Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01675 and IAI46_01680 overlap by 4 nucleotides IAI46_01680 and IAI46_01685 are separated by 122 nucleotides IAI46_01685 and IAI46_01690 are separated by 126 nucleotides IAI46_01690 and IAI46_01695 are separated by 94 nucleotides IAI46_01695 and IAI46_01700 are separated by 458 nucleotides
IAI46_01675: IAI46_01675 - DUF350 domain-containing protein, at 368,510 to 368,908
_01675
IAI46_01680: IAI46_01680 - DUF1471 domain-containing protein, at 368,905 to 369,180
_01680
IAI46_01685: IAI46_01685 - biofilm peroxide resistance protein BsmA, at 369,303 to 369,611
_01685
IAI46_01690: IAI46_01690 - esterase, at 369,738 to 370,490
_01690
IAI46_01695: IAI46_01695 - DUF1471 domain-containing protein, at 370,585 to 370,851
_01695
IAI46_01700: IAI46_01700 - 30S ribosomal protein S6, at 371,310 to 371,708
_01700
Position (kb) 369
370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 368.739 kb on + strand, within IAI46_01675 at 368.763 kb on + strand, within IAI46_01675 at 368.764 kb on - strand, within IAI46_01675 at 368.795 kb on + strand, within IAI46_01675 at 368.795 kb on + strand, within IAI46_01675 at 368.796 kb on - strand, within IAI46_01675 at 368.796 kb on - strand, within IAI46_01675 at 368.796 kb on - strand, within IAI46_01675 at 368.796 kb on - strand, within IAI46_01675 at 368.798 kb on - strand, within IAI46_01675 at 368.903 kb on + strand at 368.903 kb on + strand at 368.903 kb on + strand at 368.903 kb on + strand at 368.903 kb on + strand at 368.904 kb on - strand at 368.904 kb on - strand at 368.906 kb on + strand at 368.906 kb on + strand at 368.906 kb on + strand at 368.907 kb on - strand at 368.907 kb on - strand at 368.912 kb on + strand at 368.912 kb on + strand at 368.913 kb on - strand at 368.917 kb on + strand at 368.918 kb on - strand at 368.918 kb on - strand at 368.918 kb on - strand at 368.918 kb on - strand at 368.975 kb on + strand, within IAI46_01680 at 368.978 kb on + strand, within IAI46_01680 at 368.979 kb on - strand, within IAI46_01680 at 368.979 kb on - strand, within IAI46_01680 at 368.979 kb on - strand, within IAI46_01680 at 369.023 kb on - strand, within IAI46_01680 at 369.023 kb on - strand, within IAI46_01680 at 369.141 kb on + strand, within IAI46_01680 at 369.250 kb on - strand at 369.279 kb on + strand at 369.366 kb on + strand, within IAI46_01685 at 369.367 kb on - strand, within IAI46_01685 at 369.373 kb on + strand, within IAI46_01685 at 369.373 kb on + strand, within IAI46_01685 at 369.373 kb on + strand, within IAI46_01685 at 369.374 kb on - strand, within IAI46_01685 at 369.374 kb on - strand, within IAI46_01685 at 369.377 kb on - strand, within IAI46_01685 at 369.611 kb on + strand at 369.611 kb on + strand at 369.612 kb on - strand at 369.615 kb on + strand at 369.615 kb on + strand at 369.615 kb on + strand at 369.615 kb on + strand at 369.616 kb on - strand at 369.616 kb on - strand at 369.632 kb on + strand at 369.648 kb on + strand at 369.649 kb on - strand at 369.649 kb on - strand at 369.657 kb on - strand at 369.658 kb on + strand at 369.678 kb on + strand at 369.678 kb on + strand at 369.678 kb on + strand at 369.679 kb on - strand at 369.679 kb on - strand at 369.679 kb on - strand at 369.679 kb on - strand at 369.705 kb on + strand at 369.706 kb on - strand at 369.770 kb on + strand at 369.771 kb on - strand at 369.771 kb on - strand at 369.771 kb on - strand at 369.771 kb on - strand at 369.826 kb on + strand, within IAI46_01690 at 369.827 kb on - strand, within IAI46_01690 at 369.843 kb on + strand, within IAI46_01690 at 369.843 kb on + strand, within IAI46_01690 at 369.844 kb on - strand, within IAI46_01690 at 369.844 kb on - strand, within IAI46_01690 at 369.845 kb on + strand, within IAI46_01690 at 369.845 kb on + strand, within IAI46_01690 at 369.845 kb on + strand, within IAI46_01690 at 369.845 kb on + strand, within IAI46_01690 at 369.845 kb on + strand, within IAI46_01690 at 369.845 kb on + strand, within IAI46_01690 at 369.846 kb on - strand, within IAI46_01690 at 369.846 kb on - strand, within IAI46_01690 at 369.846 kb on - strand, within IAI46_01690 at 369.846 kb on - strand, within IAI46_01690 at 369.846 kb on - strand, within IAI46_01690 at 369.864 kb on + strand, within IAI46_01690 at 369.865 kb on - strand, within IAI46_01690 at 369.880 kb on - strand, within IAI46_01690 at 369.999 kb on - strand, within IAI46_01690 at 370.000 kb on + strand, within IAI46_01690 at 370.010 kb on - strand, within IAI46_01690 at 370.164 kb on + strand, within IAI46_01690 at 370.164 kb on + strand, within IAI46_01690 at 370.165 kb on - strand, within IAI46_01690 at 370.165 kb on - strand, within IAI46_01690 at 370.211 kb on + strand, within IAI46_01690 at 370.263 kb on + strand, within IAI46_01690 at 370.427 kb on + strand at 370.428 kb on - strand at 370.488 kb on + strand at 370.586 kb on + strand at 370.592 kb on + strand at 370.593 kb on - strand at 370.681 kb on + strand, within IAI46_01695 at 370.682 kb on - strand, within IAI46_01695 at 370.839 kb on + strand at 370.839 kb on + strand at 370.840 kb on - strand at 370.840 kb on - strand at 370.851 kb on + strand at 370.851 kb on + strand at 370.851 kb on + strand at 370.851 kb on + strand at 370.852 kb on - strand at 370.852 kb on - strand at 370.852 kb on - strand at 370.864 kb on + strand at 370.865 kb on - strand at 370.981 kb on + strand at 370.982 kb on - strand at 371.102 kb on + strand at 371.102 kb on + strand at 371.103 kb on - strand at 371.103 kb on - strand at 371.103 kb on - strand at 371.103 kb on - strand at 371.103 kb on - strand at 371.106 kb on + strand at 371.106 kb on + strand at 371.106 kb on + strand at 371.106 kb on + strand at 371.107 kb on - strand at 371.107 kb on - strand at 371.107 kb on - strand at 371.113 kb on + strand at 371.114 kb on - strand at 371.120 kb on - strand at 371.132 kb on + strand at 371.132 kb on + strand at 371.132 kb on + strand at 371.132 kb on + strand at 371.133 kb on - strand at 371.133 kb on - strand at 371.137 kb on - strand at 371.137 kb on - strand at 371.141 kb on - strand at 371.163 kb on + strand at 371.163 kb on + strand at 371.163 kb on + strand at 371.164 kb on - strand at 371.167 kb on + strand at 371.167 kb on + strand at 371.167 kb on + strand at 371.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30 remove 368,739 + IAI46_01675 0.57 +1.2 368,763 + IAI46_01675 0.63 +2.0 368,764 - IAI46_01675 0.64 +0.2 368,795 + IAI46_01675 0.71 +2.0 368,795 + IAI46_01675 0.71 +0.0 368,796 - IAI46_01675 0.72 +1.5 368,796 - IAI46_01675 0.72 +0.0 368,796 - IAI46_01675 0.72 +0.5 368,796 - IAI46_01675 0.72 +0.1 368,798 - IAI46_01675 0.72 +0.3 368,903 + -0.1 368,903 + -2.3 368,903 + -3.2 368,903 + -1.7 368,903 + -1.1 368,904 - -1.8 368,904 - +1.2 368,906 + +0.3 368,906 + +1.0 368,906 + -2.8 368,907 - -2.1 368,907 - -0.2 368,912 + +1.4 368,912 + +0.9 368,913 - +1.7 368,917 + -0.8 368,918 - +1.7 368,918 - -1.5 368,918 - -0.9 368,918 - -0.8 368,975 + IAI46_01680 0.25 +0.1 368,978 + IAI46_01680 0.26 -0.0 368,979 - IAI46_01680 0.27 -0.5 368,979 - IAI46_01680 0.27 +0.3 368,979 - IAI46_01680 0.27 -0.6 369,023 - IAI46_01680 0.43 +2.5 369,023 - IAI46_01680 0.43 -2.3 369,141 + IAI46_01680 0.86 +0.3 369,250 - +0.1 369,279 + +1.1 369,366 + IAI46_01685 0.20 -0.4 369,367 - IAI46_01685 0.21 +1.5 369,373 + IAI46_01685 0.23 -0.8 369,373 + IAI46_01685 0.23 -0.1 369,373 + IAI46_01685 0.23 -1.2 369,374 - IAI46_01685 0.23 -1.9 369,374 - IAI46_01685 0.23 -0.6 369,377 - IAI46_01685 0.24 +1.7 369,611 + +0.7 369,611 + +1.5 369,612 - -0.6 369,615 + +1.6 369,615 + -0.6 369,615 + +0.7 369,615 + +0.4 369,616 - -0.1 369,616 - -0.3 369,632 + +0.2 369,648 + -1.8 369,649 - +0.4 369,649 - +0.3 369,657 - -0.1 369,658 + +0.8 369,678 + -1.6 369,678 + +0.2 369,678 + -0.6 369,679 - +0.2 369,679 - +0.5 369,679 - +1.4 369,679 - +0.6 369,705 + +0.4 369,706 - +0.4 369,770 + -0.7 369,771 - -0.2 369,771 - +0.2 369,771 - +0.4 369,771 - +2.3 369,826 + IAI46_01690 0.12 +0.2 369,827 - IAI46_01690 0.12 -0.7 369,843 + IAI46_01690 0.14 +0.6 369,843 + IAI46_01690 0.14 -0.5 369,844 - IAI46_01690 0.14 -0.9 369,844 - IAI46_01690 0.14 -0.1 369,845 + IAI46_01690 0.14 +1.7 369,845 + IAI46_01690 0.14 -0.3 369,845 + IAI46_01690 0.14 -0.4 369,845 + IAI46_01690 0.14 +3.6 369,845 + IAI46_01690 0.14 +0.8 369,845 + IAI46_01690 0.14 +0.5 369,846 - IAI46_01690 0.14 +1.2 369,846 - IAI46_01690 0.14 -0.2 369,846 - IAI46_01690 0.14 -1.7 369,846 - IAI46_01690 0.14 -0.3 369,846 - IAI46_01690 0.14 -0.8 369,864 + IAI46_01690 0.17 +2.5 369,865 - IAI46_01690 0.17 +3.0 369,880 - IAI46_01690 0.19 +1.4 369,999 - IAI46_01690 0.35 -0.6 370,000 + IAI46_01690 0.35 -1.4 370,010 - IAI46_01690 0.36 -0.8 370,164 + IAI46_01690 0.57 +1.0 370,164 + IAI46_01690 0.57 -0.3 370,165 - IAI46_01690 0.57 +1.8 370,165 - IAI46_01690 0.57 -2.1 370,211 + IAI46_01690 0.63 +0.7 370,263 + IAI46_01690 0.70 -0.3 370,427 + +0.8 370,428 - -1.1 370,488 + -0.7 370,586 + -0.7 370,592 + -2.0 370,593 - -0.2 370,681 + IAI46_01695 0.36 +0.0 370,682 - IAI46_01695 0.36 -0.1 370,839 + -0.6 370,839 + +0.1 370,840 - +1.5 370,840 - +0.2 370,851 + +0.6 370,851 + -1.3 370,851 + +0.4 370,851 + +0.8 370,852 - +1.5 370,852 - -1.9 370,852 - +0.9 370,864 + -2.2 370,865 - +0.2 370,981 + -3.0 370,982 - +1.9 371,102 + -0.3 371,102 + +0.6 371,103 - -0.7 371,103 - +0.7 371,103 - -0.4 371,103 - -0.6 371,103 - -0.6 371,106 + -1.6 371,106 + +2.5 371,106 + +0.2 371,106 + +0.5 371,107 - -0.3 371,107 - +0.7 371,107 - -1.6 371,113 + +0.5 371,114 - +0.1 371,120 - -3.1 371,132 + -0.4 371,132 + +2.0 371,132 + +1.8 371,132 + -0.6 371,133 - -2.3 371,133 - -0.6 371,137 - +0.9 371,137 - +1.0 371,141 - +0.8 371,163 + +1.1 371,163 + -0.3 371,163 + -1.4 371,164 - -0.7 371,167 + -0.1 371,167 + +0.9 371,167 + +1.3 371,167 + +1.9
Or see this region's nucleotide sequence