Experiment: Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01440 and IAI46_01445 are separated by 695 nucleotides IAI46_01445 and IAI46_01450 are separated by 81 nucleotides
IAI46_01440: IAI46_01440 - pentaheme c-type cytochrome TorC, at 317,968 to 319,131
_01440
IAI46_01445: IAI46_01445 - TMAO reductase system periplasmic protein TorT, at 319,827 to 320,990
_01445
IAI46_01450: IAI46_01450 - TMAO reductase system sensor histidine kinase/response regulator TorS, at 321,072 to 323,813
_01450
Position (kb) 319
320
321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 318.830 kb on + strand, within IAI46_01440 at 318.830 kb on + strand, within IAI46_01440 at 318.831 kb on - strand, within IAI46_01440 at 318.876 kb on + strand, within IAI46_01440 at 318.877 kb on - strand, within IAI46_01440 at 318.877 kb on - strand, within IAI46_01440 at 318.888 kb on + strand, within IAI46_01440 at 318.889 kb on - strand, within IAI46_01440 at 318.913 kb on + strand, within IAI46_01440 at 318.914 kb on - strand, within IAI46_01440 at 318.950 kb on + strand, within IAI46_01440 at 318.951 kb on - strand, within IAI46_01440 at 318.959 kb on + strand, within IAI46_01440 at 318.960 kb on - strand, within IAI46_01440 at 318.960 kb on - strand, within IAI46_01440 at 318.960 kb on - strand, within IAI46_01440 at 318.961 kb on + strand, within IAI46_01440 at 318.962 kb on - strand, within IAI46_01440 at 318.999 kb on + strand, within IAI46_01440 at 319.000 kb on - strand, within IAI46_01440 at 319.014 kb on + strand, within IAI46_01440 at 319.014 kb on + strand, within IAI46_01440 at 319.014 kb on + strand, within IAI46_01440 at 319.014 kb on + strand, within IAI46_01440 at 319.015 kb on - strand at 319.070 kb on - strand at 319.135 kb on + strand at 319.135 kb on + strand at 319.148 kb on + strand at 319.149 kb on - strand at 319.149 kb on - strand at 319.151 kb on + strand at 319.151 kb on + strand at 319.152 kb on - strand at 319.152 kb on - strand at 319.152 kb on - strand at 319.165 kb on + strand at 319.165 kb on + strand at 319.166 kb on - strand at 319.166 kb on - strand at 319.168 kb on + strand at 319.174 kb on - strand at 319.174 kb on - strand at 319.180 kb on + strand at 319.180 kb on + strand at 319.180 kb on + strand at 319.181 kb on - strand at 319.184 kb on + strand at 319.185 kb on - strand at 319.185 kb on - strand at 319.185 kb on - strand at 319.217 kb on + strand at 319.217 kb on + strand at 319.217 kb on + strand at 319.217 kb on + strand at 319.218 kb on - strand at 319.228 kb on - strand at 319.283 kb on + strand at 319.318 kb on + strand at 319.319 kb on - strand at 319.319 kb on - strand at 319.319 kb on - strand at 319.326 kb on + strand at 319.388 kb on + strand at 319.388 kb on + strand at 319.388 kb on + strand at 319.389 kb on - strand at 319.414 kb on + strand at 319.418 kb on - strand at 319.418 kb on - strand at 319.493 kb on + strand at 319.534 kb on + strand at 319.535 kb on - strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.561 kb on - strand at 319.561 kb on - strand at 319.561 kb on - strand at 319.561 kb on - strand at 319.671 kb on + strand at 319.671 kb on + strand at 319.695 kb on - strand at 319.709 kb on + strand at 319.710 kb on - strand at 319.776 kb on - strand at 319.779 kb on - strand at 319.779 kb on - strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.870 kb on + strand at 319.870 kb on + strand at 319.870 kb on + strand at 319.870 kb on + strand at 319.870 kb on + strand at 319.871 kb on - strand at 319.871 kb on - strand at 319.936 kb on - strand at 319.973 kb on - strand, within IAI46_01445 at 319.973 kb on - strand, within IAI46_01445 at 320.005 kb on - strand, within IAI46_01445 at 320.010 kb on + strand, within IAI46_01445 at 320.044 kb on - strand, within IAI46_01445 at 320.182 kb on + strand, within IAI46_01445 at 320.184 kb on + strand, within IAI46_01445 at 320.184 kb on + strand, within IAI46_01445 at 320.185 kb on - strand, within IAI46_01445 at 320.185 kb on - strand, within IAI46_01445 at 320.185 kb on - strand, within IAI46_01445 at 320.185 kb on - strand, within IAI46_01445 at 320.200 kb on + strand, within IAI46_01445 at 320.320 kb on - strand, within IAI46_01445 at 320.320 kb on - strand, within IAI46_01445 at 320.322 kb on + strand, within IAI46_01445 at 320.322 kb on + strand, within IAI46_01445 at 320.323 kb on - strand, within IAI46_01445 at 320.334 kb on + strand, within IAI46_01445 at 320.334 kb on + strand, within IAI46_01445 at 320.334 kb on + strand, within IAI46_01445 at 320.334 kb on + strand, within IAI46_01445 at 320.334 kb on + strand, within IAI46_01445 at 320.335 kb on - strand, within IAI46_01445 at 320.335 kb on - strand, within IAI46_01445 at 320.341 kb on - strand, within IAI46_01445 at 320.356 kb on + strand, within IAI46_01445 at 320.357 kb on - strand, within IAI46_01445 at 320.512 kb on + strand, within IAI46_01445 at 320.682 kb on + strand, within IAI46_01445 at 320.682 kb on + strand, within IAI46_01445 at 320.682 kb on + strand, within IAI46_01445 at 320.683 kb on - strand, within IAI46_01445 at 320.683 kb on - strand, within IAI46_01445 at 320.683 kb on - strand, within IAI46_01445 at 320.713 kb on + strand, within IAI46_01445 at 320.730 kb on + strand, within IAI46_01445 at 320.731 kb on - strand, within IAI46_01445 at 320.776 kb on + strand, within IAI46_01445 at 320.795 kb on - strand, within IAI46_01445 at 320.795 kb on - strand, within IAI46_01445 at 320.816 kb on - strand, within IAI46_01445 at 320.990 kb on + strand at 320.990 kb on + strand at 320.993 kb on + strand at 320.994 kb on - strand at 321.001 kb on + strand at 321.005 kb on + strand at 321.005 kb on + strand at 321.005 kb on + strand at 321.006 kb on - strand at 321.006 kb on - strand at 321.006 kb on - strand at 321.009 kb on - strand at 321.016 kb on + strand at 321.021 kb on + strand at 321.022 kb on - strand at 321.022 kb on - strand at 321.051 kb on - strand at 321.067 kb on + strand at 321.067 kb on + strand at 321.068 kb on - strand at 321.068 kb on - strand at 321.068 kb on - strand at 321.071 kb on + strand at 321.071 kb on + strand at 321.072 kb on - strand at 321.072 kb on - strand at 321.072 kb on - strand at 321.130 kb on + strand at 321.151 kb on + strand at 321.152 kb on - strand at 321.255 kb on + strand at 321.256 kb on - strand at 321.256 kb on - strand at 321.389 kb on + strand, within IAI46_01450 at 321.389 kb on + strand, within IAI46_01450 at 321.389 kb on + strand, within IAI46_01450 at 321.390 kb on - strand, within IAI46_01450 at 321.422 kb on + strand, within IAI46_01450 at 321.422 kb on + strand, within IAI46_01450 at 321.423 kb on - strand, within IAI46_01450 at 321.434 kb on - strand, within IAI46_01450 at 321.506 kb on + strand, within IAI46_01450 at 321.506 kb on + strand, within IAI46_01450 at 321.506 kb on + strand, within IAI46_01450 at 321.550 kb on + strand, within IAI46_01450 at 321.550 kb on + strand, within IAI46_01450 at 321.551 kb on - strand, within IAI46_01450 at 321.594 kb on + strand, within IAI46_01450 at 321.664 kb on - strand, within IAI46_01450 at 321.669 kb on + strand, within IAI46_01450 at 321.670 kb on - strand, within IAI46_01450 at 321.691 kb on + strand, within IAI46_01450 at 321.691 kb on + strand, within IAI46_01450 at 321.691 kb on + strand, within IAI46_01450 at 321.692 kb on - strand, within IAI46_01450 at 321.692 kb on - strand, within IAI46_01450 at 321.692 kb on - strand, within IAI46_01450 at 321.769 kb on + strand, within IAI46_01450 at 321.789 kb on + strand, within IAI46_01450 at 321.789 kb on + strand, within IAI46_01450 at 321.789 kb on + strand, within IAI46_01450 at 321.789 kb on + strand, within IAI46_01450 at 321.789 kb on + strand, within IAI46_01450 at 321.798 kb on - strand, within IAI46_01450 at 321.798 kb on - strand, within IAI46_01450 at 321.836 kb on + strand, within IAI46_01450 at 321.837 kb on - strand, within IAI46_01450 at 321.850 kb on + strand, within IAI46_01450 at 321.879 kb on + strand, within IAI46_01450 at 321.960 kb on - strand, within IAI46_01450 at 321.966 kb on - strand, within IAI46_01450
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30 remove 318,830 + IAI46_01440 0.74 +0.6 318,830 + IAI46_01440 0.74 +0.1 318,831 - IAI46_01440 0.74 +0.8 318,876 + IAI46_01440 0.78 +0.4 318,877 - IAI46_01440 0.78 -3.0 318,877 - IAI46_01440 0.78 +4.1 318,888 + IAI46_01440 0.79 -1.4 318,889 - IAI46_01440 0.79 +0.9 318,913 + IAI46_01440 0.81 -0.2 318,914 - IAI46_01440 0.81 -0.3 318,950 + IAI46_01440 0.84 +0.0 318,951 - IAI46_01440 0.84 +1.1 318,959 + IAI46_01440 0.85 +0.2 318,960 - IAI46_01440 0.85 -1.3 318,960 - IAI46_01440 0.85 -0.5 318,960 - IAI46_01440 0.85 -1.2 318,961 + IAI46_01440 0.85 +0.5 318,962 - IAI46_01440 0.85 -0.0 318,999 + IAI46_01440 0.89 -2.0 319,000 - IAI46_01440 0.89 -1.3 319,014 + IAI46_01440 0.90 +1.4 319,014 + IAI46_01440 0.90 +0.8 319,014 + IAI46_01440 0.90 +1.4 319,014 + IAI46_01440 0.90 -0.2 319,015 - +0.8 319,070 - -1.8 319,135 + -1.0 319,135 + -0.0 319,148 + +0.5 319,149 - -0.6 319,149 - -0.2 319,151 + +1.0 319,151 + +0.5 319,152 - +2.3 319,152 - -2.0 319,152 - -1.3 319,165 + -0.0 319,165 + -1.0 319,166 - +0.9 319,166 - -0.4 319,168 + -1.6 319,174 - -0.3 319,174 - +0.9 319,180 + -0.4 319,180 + -0.2 319,180 + +1.0 319,181 - +1.2 319,184 + +0.3 319,185 - +0.8 319,185 - +0.6 319,185 - -0.3 319,217 + -0.5 319,217 + -0.9 319,217 + -0.1 319,217 + +0.4 319,218 - -2.3 319,228 - +0.4 319,283 + -0.4 319,318 + -1.0 319,319 - +1.0 319,319 - -0.4 319,319 - -0.0 319,326 + -0.3 319,388 + -2.7 319,388 + -0.6 319,388 + +0.1 319,389 - +0.1 319,414 + +0.7 319,418 - -1.4 319,418 - -0.6 319,493 + -0.8 319,534 + +0.0 319,535 - -1.3 319,560 + -1.7 319,560 + -2.0 319,560 + +0.2 319,560 + +0.6 319,560 + +2.6 319,560 + +1.4 319,560 + +2.0 319,560 + +1.1 319,560 + +1.2 319,561 - -0.2 319,561 - -0.6 319,561 - -1.3 319,561 - +1.1 319,671 + +0.7 319,671 + +1.0 319,695 - -0.1 319,709 + +0.0 319,710 - +0.8 319,776 - -1.8 319,779 - -0.1 319,779 - -1.2 319,864 + -0.5 319,864 + +1.1 319,864 + -0.5 319,864 + -1.3 319,864 + -2.1 319,864 + -2.0 319,864 + +0.5 319,864 + -2.0 319,865 - +0.7 319,865 - +0.5 319,865 - +0.6 319,865 - -0.4 319,865 - -0.2 319,865 - +0.4 319,865 - +1.3 319,865 - +0.3 319,870 + -0.2 319,870 + +1.6 319,870 + +0.4 319,870 + -0.0 319,870 + +0.9 319,871 - -3.0 319,871 - +3.6 319,936 - -1.8 319,973 - IAI46_01445 0.13 -2.9 319,973 - IAI46_01445 0.13 -0.4 320,005 - IAI46_01445 0.15 -0.6 320,010 + IAI46_01445 0.16 -1.8 320,044 - IAI46_01445 0.19 -1.9 320,182 + IAI46_01445 0.30 +1.5 320,184 + IAI46_01445 0.31 -0.8 320,184 + IAI46_01445 0.31 -2.3 320,185 - IAI46_01445 0.31 +0.3 320,185 - IAI46_01445 0.31 -0.4 320,185 - IAI46_01445 0.31 +0.1 320,185 - IAI46_01445 0.31 -0.1 320,200 + IAI46_01445 0.32 +0.3 320,320 - IAI46_01445 0.42 -1.1 320,320 - IAI46_01445 0.42 -1.3 320,322 + IAI46_01445 0.43 +0.4 320,322 + IAI46_01445 0.43 +1.1 320,323 - IAI46_01445 0.43 +0.1 320,334 + IAI46_01445 0.44 +1.1 320,334 + IAI46_01445 0.44 -1.2 320,334 + IAI46_01445 0.44 -0.2 320,334 + IAI46_01445 0.44 -1.5 320,334 + IAI46_01445 0.44 -1.0 320,335 - IAI46_01445 0.44 -0.7 320,335 - IAI46_01445 0.44 +1.3 320,341 - IAI46_01445 0.44 +1.4 320,356 + IAI46_01445 0.45 +0.2 320,357 - IAI46_01445 0.46 +0.6 320,512 + IAI46_01445 0.59 +0.1 320,682 + IAI46_01445 0.73 +0.1 320,682 + IAI46_01445 0.73 +0.6 320,682 + IAI46_01445 0.73 -1.6 320,683 - IAI46_01445 0.74 -0.1 320,683 - IAI46_01445 0.74 -0.9 320,683 - IAI46_01445 0.74 -0.4 320,713 + IAI46_01445 0.76 +1.4 320,730 + IAI46_01445 0.78 -0.1 320,731 - IAI46_01445 0.78 -1.4 320,776 + IAI46_01445 0.82 +0.9 320,795 - IAI46_01445 0.83 +1.5 320,795 - IAI46_01445 0.83 +2.3 320,816 - IAI46_01445 0.85 -1.0 320,990 + +0.0 320,990 + -1.7 320,993 + -1.4 320,994 - +0.6 321,001 + -1.4 321,005 + -0.2 321,005 + +0.4 321,005 + -0.4 321,006 - -0.3 321,006 - -0.2 321,006 - +0.2 321,009 - +1.2 321,016 + +0.5 321,021 + +0.5 321,022 - -0.7 321,022 - +1.2 321,051 - -0.8 321,067 + -0.1 321,067 + +0.6 321,068 - -1.1 321,068 - -1.2 321,068 - -1.6 321,071 + -1.0 321,071 + +1.5 321,072 - +0.2 321,072 - +0.8 321,072 - +1.5 321,130 + +1.7 321,151 + -0.3 321,152 - +0.5 321,255 + -0.4 321,256 - +0.5 321,256 - +0.0 321,389 + IAI46_01450 0.12 -2.8 321,389 + IAI46_01450 0.12 +0.3 321,389 + IAI46_01450 0.12 +1.9 321,390 - IAI46_01450 0.12 +0.6 321,422 + IAI46_01450 0.13 -0.5 321,422 + IAI46_01450 0.13 -0.6 321,423 - IAI46_01450 0.13 +1.0 321,434 - IAI46_01450 0.13 +0.5 321,506 + IAI46_01450 0.16 -1.6 321,506 + IAI46_01450 0.16 +3.1 321,506 + IAI46_01450 0.16 +0.8 321,550 + IAI46_01450 0.17 -0.8 321,550 + IAI46_01450 0.17 +2.7 321,551 - IAI46_01450 0.17 -0.3 321,594 + IAI46_01450 0.19 +0.0 321,664 - IAI46_01450 0.22 -1.6 321,669 + IAI46_01450 0.22 +0.5 321,670 - IAI46_01450 0.22 -0.2 321,691 + IAI46_01450 0.23 -0.2 321,691 + IAI46_01450 0.23 +0.4 321,691 + IAI46_01450 0.23 -0.3 321,692 - IAI46_01450 0.23 +0.5 321,692 - IAI46_01450 0.23 +1.5 321,692 - IAI46_01450 0.23 -2.2 321,769 + IAI46_01450 0.25 -1.9 321,789 + IAI46_01450 0.26 +1.9 321,789 + IAI46_01450 0.26 -0.2 321,789 + IAI46_01450 0.26 -0.3 321,789 + IAI46_01450 0.26 -0.5 321,789 + IAI46_01450 0.26 +0.9 321,798 - IAI46_01450 0.26 +1.1 321,798 - IAI46_01450 0.26 -0.3 321,836 + IAI46_01450 0.28 -1.0 321,837 - IAI46_01450 0.28 -3.4 321,850 + IAI46_01450 0.28 +0.4 321,879 + IAI46_01450 0.29 +1.4 321,960 - IAI46_01450 0.32 +0.6 321,966 - IAI46_01450 0.33 +1.3
Or see this region's nucleotide sequence