Strain Fitness in Serratia liquefaciens MT49 around IAI46_00635

Experiment: Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_00630 and IAI46_00635 overlap by 4 nucleotidesIAI46_00635 and IAI46_00640 overlap by 4 nucleotides IAI46_00630: IAI46_00630 - lipid III flippase WzxE, at 148,647 to 149,897 _00630 IAI46_00635: IAI46_00635 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 149,894 to 150,979 _00635 IAI46_00640: IAI46_00640 - ECA oligosaccharide polymerase, at 150,976 to 152,352 _00640 Position (kb) 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1at 148.959 kb on - strand, within IAI46_00630at 148.959 kb on - strand, within IAI46_00630at 148.959 kb on - strand, within IAI46_00630at 148.989 kb on + strand, within IAI46_00630at 148.990 kb on - strand, within IAI46_00630at 149.018 kb on + strand, within IAI46_00630at 149.019 kb on - strand, within IAI46_00630at 149.051 kb on + strand, within IAI46_00630at 149.052 kb on - strand, within IAI46_00630at 149.133 kb on + strand, within IAI46_00630at 149.134 kb on - strand, within IAI46_00630at 149.134 kb on - strand, within IAI46_00630at 149.136 kb on + strand, within IAI46_00630at 149.136 kb on + strand, within IAI46_00630at 149.137 kb on - strand, within IAI46_00630at 149.350 kb on - strand, within IAI46_00630at 149.350 kb on - strand, within IAI46_00630at 149.382 kb on + strand, within IAI46_00630at 149.470 kb on - strand, within IAI46_00630at 149.470 kb on - strand, within IAI46_00630at 149.481 kb on - strand, within IAI46_00630at 149.481 kb on - strand, within IAI46_00630at 149.557 kb on + strand, within IAI46_00630at 149.584 kb on + strand, within IAI46_00630at 149.663 kb on - strand, within IAI46_00630at 149.672 kb on - strand, within IAI46_00630at 149.689 kb on - strand, within IAI46_00630at 149.689 kb on - strand, within IAI46_00630at 149.689 kb on - strand, within IAI46_00630at 149.689 kb on - strand, within IAI46_00630at 149.689 kb on - strand, within IAI46_00630at 149.736 kb on - strand, within IAI46_00630at 149.827 kb on - strandat 149.827 kb on - strandat 149.839 kb on - strandat 149.862 kb on - strandat 149.880 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.913 kb on + strandat 150.011 kb on - strand, within IAI46_00635at 150.011 kb on - strand, within IAI46_00635at 150.164 kb on - strand, within IAI46_00635at 150.164 kb on - strand, within IAI46_00635at 150.164 kb on - strand, within IAI46_00635at 150.221 kb on - strand, within IAI46_00635at 150.221 kb on - strand, within IAI46_00635at 150.275 kb on + strand, within IAI46_00635at 150.275 kb on + strand, within IAI46_00635at 150.276 kb on - strand, within IAI46_00635at 150.334 kb on + strand, within IAI46_00635at 150.335 kb on - strand, within IAI46_00635at 150.337 kb on + strand, within IAI46_00635at 150.337 kb on + strand, within IAI46_00635at 150.337 kb on + strand, within IAI46_00635at 150.338 kb on - strand, within IAI46_00635at 150.344 kb on + strand, within IAI46_00635at 150.344 kb on + strand, within IAI46_00635at 150.344 kb on + strand, within IAI46_00635at 150.383 kb on + strand, within IAI46_00635at 150.384 kb on - strand, within IAI46_00635at 150.427 kb on - strand, within IAI46_00635at 150.494 kb on - strand, within IAI46_00635at 150.494 kb on - strand, within IAI46_00635at 150.494 kb on - strand, within IAI46_00635at 150.581 kb on + strand, within IAI46_00635at 150.581 kb on + strand, within IAI46_00635at 150.582 kb on - strand, within IAI46_00635at 150.582 kb on - strand, within IAI46_00635at 150.582 kb on - strand, within IAI46_00635at 150.582 kb on - strand, within IAI46_00635at 150.583 kb on + strand, within IAI46_00635at 150.583 kb on + strand, within IAI46_00635at 150.584 kb on - strand, within IAI46_00635at 150.584 kb on - strand, within IAI46_00635at 150.594 kb on + strand, within IAI46_00635at 150.610 kb on - strand, within IAI46_00635at 150.676 kb on + strand, within IAI46_00635at 150.701 kb on + strand, within IAI46_00635at 150.701 kb on + strand, within IAI46_00635at 150.713 kb on - strand, within IAI46_00635at 150.729 kb on + strand, within IAI46_00635at 150.833 kb on + strand, within IAI46_00635at 150.834 kb on - strand, within IAI46_00635at 150.922 kb on + strandat 150.922 kb on + strandat 150.926 kb on + strandat 150.926 kb on + strandat 150.926 kb on + strandat 150.926 kb on + strandat 150.927 kb on - strandat 150.927 kb on - strandat 150.927 kb on - strandat 150.975 kb on + strandat 150.975 kb on + strandat 150.975 kb on + strandat 150.976 kb on - strandat 150.976 kb on - strandat 150.976 kb on - strandat 151.006 kb on - strandat 151.032 kb on + strandat 151.049 kb on - strandat 151.049 kb on - strandat 151.188 kb on - strand, within IAI46_00640at 151.229 kb on - strand, within IAI46_00640at 151.240 kb on + strand, within IAI46_00640at 151.240 kb on + strand, within IAI46_00640at 151.240 kb on + strand, within IAI46_00640at 151.241 kb on - strand, within IAI46_00640at 151.243 kb on - strand, within IAI46_00640at 151.278 kb on + strand, within IAI46_00640at 151.460 kb on - strand, within IAI46_00640at 151.489 kb on + strand, within IAI46_00640at 151.490 kb on - strand, within IAI46_00640at 151.562 kb on - strand, within IAI46_00640at 151.569 kb on - strand, within IAI46_00640at 151.569 kb on - strand, within IAI46_00640at 151.597 kb on - strand, within IAI46_00640at 151.750 kb on - strand, within IAI46_00640at 151.774 kb on - strand, within IAI46_00640at 151.951 kb on - strand, within IAI46_00640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30
remove
148,959 - IAI46_00630 0.25 -0.1
148,959 - IAI46_00630 0.25 -1.1
148,959 - IAI46_00630 0.25 -1.9
148,989 + IAI46_00630 0.27 +0.2
148,990 - IAI46_00630 0.27 -0.7
149,018 + IAI46_00630 0.30 +0.6
149,019 - IAI46_00630 0.30 -0.9
149,051 + IAI46_00630 0.32 -0.3
149,052 - IAI46_00630 0.32 -0.8
149,133 + IAI46_00630 0.39 -2.2
149,134 - IAI46_00630 0.39 -0.7
149,134 - IAI46_00630 0.39 -1.8
149,136 + IAI46_00630 0.39 -1.2
149,136 + IAI46_00630 0.39 +0.6
149,137 - IAI46_00630 0.39 -0.3
149,350 - IAI46_00630 0.56 -0.6
149,350 - IAI46_00630 0.56 -0.8
149,382 + IAI46_00630 0.59 -1.0
149,470 - IAI46_00630 0.66 -2.1
149,470 - IAI46_00630 0.66 -1.9
149,481 - IAI46_00630 0.67 -2.7
149,481 - IAI46_00630 0.67 +0.6
149,557 + IAI46_00630 0.73 -1.6
149,584 + IAI46_00630 0.75 -0.3
149,663 - IAI46_00630 0.81 +0.0
149,672 - IAI46_00630 0.82 -1.4
149,689 - IAI46_00630 0.83 +0.4
149,689 - IAI46_00630 0.83 -0.5
149,689 - IAI46_00630 0.83 -0.1
149,689 - IAI46_00630 0.83 -1.3
149,689 - IAI46_00630 0.83 -0.2
149,736 - IAI46_00630 0.87 -1.3
149,827 - -0.3
149,827 - -1.3
149,839 - -0.6
149,862 - -1.0
149,880 + -0.7
149,893 + -1.8
149,893 + +0.2
149,893 + +0.2
149,913 + -0.3
150,011 - IAI46_00635 0.11 +0.9
150,011 - IAI46_00635 0.11 -0.3
150,164 - IAI46_00635 0.25 -2.3
150,164 - IAI46_00635 0.25 -0.7
150,164 - IAI46_00635 0.25 -3.5
150,221 - IAI46_00635 0.30 -3.5
150,221 - IAI46_00635 0.30 -2.2
150,275 + IAI46_00635 0.35 -1.2
150,275 + IAI46_00635 0.35 -2.7
150,276 - IAI46_00635 0.35 -1.3
150,334 + IAI46_00635 0.41 -1.7
150,335 - IAI46_00635 0.41 -1.4
150,337 + IAI46_00635 0.41 -2.6
150,337 + IAI46_00635 0.41 -0.7
150,337 + IAI46_00635 0.41 -2.1
150,338 - IAI46_00635 0.41 -1.6
150,344 + IAI46_00635 0.41 -2.7
150,344 + IAI46_00635 0.41 -3.0
150,344 + IAI46_00635 0.41 -1.1
150,383 + IAI46_00635 0.45 -2.4
150,384 - IAI46_00635 0.45 -0.8
150,427 - IAI46_00635 0.49 +0.6
150,494 - IAI46_00635 0.55 +0.4
150,494 - IAI46_00635 0.55 -2.6
150,494 - IAI46_00635 0.55 -1.6
150,581 + IAI46_00635 0.63 -0.3
150,581 + IAI46_00635 0.63 -3.1
150,582 - IAI46_00635 0.63 -2.8
150,582 - IAI46_00635 0.63 -1.0
150,582 - IAI46_00635 0.63 -2.6
150,582 - IAI46_00635 0.63 -1.7
150,583 + IAI46_00635 0.63 -1.3
150,583 + IAI46_00635 0.63 -2.1
150,584 - IAI46_00635 0.64 -1.3
150,584 - IAI46_00635 0.64 -1.1
150,594 + IAI46_00635 0.64 -1.2
150,610 - IAI46_00635 0.66 -2.9
150,676 + IAI46_00635 0.72 -0.7
150,701 + IAI46_00635 0.74 -1.3
150,701 + IAI46_00635 0.74 +0.2
150,713 - IAI46_00635 0.75 +0.2
150,729 + IAI46_00635 0.77 -3.0
150,833 + IAI46_00635 0.86 -0.5
150,834 - IAI46_00635 0.87 -1.7
150,922 + -1.7
150,922 + -2.9
150,926 + -1.7
150,926 + -3.6
150,926 + -1.7
150,926 + +0.0
150,927 - -0.7
150,927 - -0.4
150,927 - -2.1
150,975 + -1.1
150,975 + +0.0
150,975 + +0.0
150,976 - -1.0
150,976 - -1.4
150,976 - +0.2
151,006 - -1.5
151,032 + -2.3
151,049 - +0.4
151,049 - -2.0
151,188 - IAI46_00640 0.15 -1.9
151,229 - IAI46_00640 0.18 +0.6
151,240 + IAI46_00640 0.19 -0.6
151,240 + IAI46_00640 0.19 -0.7
151,240 + IAI46_00640 0.19 -2.1
151,241 - IAI46_00640 0.19 +0.2
151,243 - IAI46_00640 0.19 -2.6
151,278 + IAI46_00640 0.22 -1.1
151,460 - IAI46_00640 0.35 -1.8
151,489 + IAI46_00640 0.37 +0.0
151,490 - IAI46_00640 0.37 -0.1
151,562 - IAI46_00640 0.43 +0.4
151,569 - IAI46_00640 0.43 -2.5
151,569 - IAI46_00640 0.43 -0.1
151,597 - IAI46_00640 0.45 -0.9
151,750 - IAI46_00640 0.56 -2.8
151,774 - IAI46_00640 0.58 -2.2
151,951 - IAI46_00640 0.71 -2.7

Or see this region's nucleotide sequence