Experiment: Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00525 and IAI46_00530 are separated by 55 nucleotides IAI46_00530 and IAI46_00535 are separated by 5 nucleotides
IAI46_00525: IAI46_00525 - UDP-forming cellulose synthase catalytic subunit, at 117,021 to 119,624
_00525
IAI46_00530: IAI46_00530 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 119,680 to 121,983
_00530
IAI46_00535: IAI46_00535 - cellulase, at 121,989 to 123,101
_00535
Position (kb) 119
120
121
122 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 118.707 kb on + strand, within IAI46_00525 at 118.707 kb on + strand, within IAI46_00525 at 118.707 kb on + strand, within IAI46_00525 at 118.707 kb on + strand, within IAI46_00525 at 118.707 kb on + strand, within IAI46_00525 at 118.707 kb on + strand, within IAI46_00525 at 118.708 kb on - strand, within IAI46_00525 at 118.708 kb on - strand, within IAI46_00525 at 118.708 kb on - strand, within IAI46_00525 at 118.708 kb on - strand, within IAI46_00525 at 118.708 kb on - strand, within IAI46_00525 at 118.708 kb on - strand, within IAI46_00525 at 118.721 kb on + strand, within IAI46_00525 at 118.721 kb on + strand, within IAI46_00525 at 118.722 kb on - strand, within IAI46_00525 at 118.722 kb on - strand, within IAI46_00525 at 118.722 kb on - strand, within IAI46_00525 at 118.722 kb on - strand, within IAI46_00525 at 118.751 kb on + strand, within IAI46_00525 at 118.802 kb on - strand, within IAI46_00525 at 118.802 kb on - strand, within IAI46_00525 at 118.812 kb on + strand, within IAI46_00525 at 118.812 kb on + strand, within IAI46_00525 at 118.812 kb on + strand, within IAI46_00525 at 118.813 kb on - strand, within IAI46_00525 at 118.814 kb on + strand, within IAI46_00525 at 118.929 kb on + strand, within IAI46_00525 at 118.929 kb on + strand, within IAI46_00525 at 118.930 kb on - strand, within IAI46_00525 at 118.930 kb on - strand, within IAI46_00525 at 118.930 kb on - strand, within IAI46_00525 at 118.931 kb on + strand, within IAI46_00525 at 118.931 kb on + strand, within IAI46_00525 at 118.931 kb on + strand, within IAI46_00525 at 118.931 kb on + strand, within IAI46_00525 at 118.931 kb on + strand, within IAI46_00525 at 118.931 kb on + strand, within IAI46_00525 at 118.931 kb on + strand, within IAI46_00525 at 118.932 kb on - strand, within IAI46_00525 at 118.932 kb on - strand, within IAI46_00525 at 118.932 kb on - strand, within IAI46_00525 at 118.932 kb on - strand, within IAI46_00525 at 119.043 kb on + strand, within IAI46_00525 at 119.043 kb on + strand, within IAI46_00525 at 119.043 kb on + strand, within IAI46_00525 at 119.044 kb on - strand, within IAI46_00525 at 119.044 kb on - strand, within IAI46_00525 at 119.044 kb on - strand, within IAI46_00525 at 119.044 kb on - strand, within IAI46_00525 at 119.044 kb on - strand, within IAI46_00525 at 119.084 kb on - strand, within IAI46_00525 at 119.171 kb on + strand, within IAI46_00525 at 119.172 kb on - strand, within IAI46_00525 at 119.172 kb on - strand, within IAI46_00525 at 119.280 kb on + strand, within IAI46_00525 at 119.280 kb on + strand, within IAI46_00525 at 119.280 kb on + strand, within IAI46_00525 at 119.333 kb on + strand, within IAI46_00525 at 119.433 kb on - strand at 119.481 kb on + strand at 119.481 kb on + strand at 119.485 kb on + strand at 119.485 kb on + strand at 119.485 kb on + strand at 119.485 kb on + strand at 119.485 kb on + strand at 119.485 kb on + strand at 119.485 kb on + strand at 119.485 kb on + strand at 119.485 kb on + strand at 119.486 kb on - strand at 119.486 kb on - strand at 119.486 kb on - strand at 119.486 kb on - strand at 119.486 kb on - strand at 119.486 kb on - strand at 119.486 kb on - strand at 119.486 kb on - strand at 119.486 kb on - strand at 119.489 kb on + strand at 119.489 kb on + strand at 119.490 kb on - strand at 119.499 kb on + strand at 119.499 kb on + strand at 119.500 kb on - strand at 119.568 kb on - strand at 119.620 kb on + strand at 119.620 kb on + strand at 119.620 kb on + strand at 119.620 kb on + strand at 119.620 kb on + strand at 119.620 kb on + strand at 119.621 kb on - strand at 119.621 kb on - strand at 119.621 kb on - strand at 119.622 kb on + strand at 119.623 kb on - strand at 119.660 kb on - strand at 119.660 kb on - strand at 119.660 kb on - strand at 119.660 kb on - strand at 119.661 kb on + strand at 119.661 kb on + strand at 119.662 kb on - strand at 119.662 kb on - strand at 119.662 kb on - strand at 119.676 kb on + strand at 119.677 kb on - strand at 119.677 kb on - strand at 119.694 kb on - strand at 119.703 kb on + strand at 119.717 kb on + strand at 119.717 kb on + strand at 119.717 kb on + strand at 119.717 kb on + strand at 119.877 kb on + strand at 120.037 kb on + strand, within IAI46_00530 at 120.038 kb on - strand, within IAI46_00530 at 120.043 kb on - strand, within IAI46_00530 at 120.043 kb on - strand, within IAI46_00530 at 120.043 kb on - strand, within IAI46_00530 at 120.043 kb on - strand, within IAI46_00530 at 120.116 kb on + strand, within IAI46_00530 at 120.128 kb on - strand, within IAI46_00530 at 120.129 kb on + strand, within IAI46_00530 at 120.361 kb on - strand, within IAI46_00530 at 120.444 kb on - strand, within IAI46_00530 at 120.445 kb on + strand, within IAI46_00530 at 120.445 kb on + strand, within IAI46_00530 at 120.445 kb on + strand, within IAI46_00530 at 120.445 kb on + strand, within IAI46_00530 at 120.445 kb on + strand, within IAI46_00530 at 120.445 kb on + strand, within IAI46_00530 at 120.445 kb on + strand, within IAI46_00530 at 120.446 kb on - strand, within IAI46_00530 at 120.446 kb on - strand, within IAI46_00530 at 120.551 kb on + strand, within IAI46_00530 at 120.551 kb on + strand, within IAI46_00530 at 120.551 kb on + strand, within IAI46_00530 at 120.552 kb on - strand, within IAI46_00530 at 120.571 kb on + strand, within IAI46_00530 at 120.571 kb on + strand, within IAI46_00530 at 120.571 kb on + strand, within IAI46_00530 at 120.572 kb on - strand, within IAI46_00530 at 120.648 kb on + strand, within IAI46_00530 at 120.648 kb on + strand, within IAI46_00530 at 120.649 kb on - strand, within IAI46_00530 at 120.712 kb on + strand, within IAI46_00530 at 120.772 kb on + strand, within IAI46_00530 at 120.773 kb on - strand, within IAI46_00530 at 120.773 kb on - strand, within IAI46_00530 at 120.873 kb on + strand, within IAI46_00530 at 120.874 kb on - strand, within IAI46_00530 at 120.874 kb on - strand, within IAI46_00530 at 120.886 kb on + strand, within IAI46_00530 at 120.887 kb on - strand, within IAI46_00530 at 120.887 kb on - strand, within IAI46_00530 at 120.887 kb on - strand, within IAI46_00530 at 120.887 kb on - strand, within IAI46_00530 at 120.887 kb on - strand, within IAI46_00530 at 120.895 kb on - strand, within IAI46_00530 at 120.895 kb on - strand, within IAI46_00530 at 120.961 kb on + strand, within IAI46_00530 at 120.961 kb on + strand, within IAI46_00530 at 120.961 kb on + strand, within IAI46_00530 at 121.050 kb on + strand, within IAI46_00530 at 121.051 kb on - strand, within IAI46_00530 at 121.102 kb on + strand, within IAI46_00530 at 121.147 kb on + strand, within IAI46_00530 at 121.148 kb on - strand, within IAI46_00530 at 121.218 kb on + strand, within IAI46_00530 at 121.219 kb on - strand, within IAI46_00530 at 121.440 kb on + strand, within IAI46_00530 at 121.458 kb on + strand, within IAI46_00530 at 121.459 kb on - strand, within IAI46_00530 at 121.482 kb on + strand, within IAI46_00530 at 121.482 kb on + strand, within IAI46_00530 at 121.482 kb on + strand, within IAI46_00530 at 121.483 kb on - strand, within IAI46_00530 at 121.702 kb on + strand, within IAI46_00530 at 121.813 kb on + strand at 121.813 kb on + strand at 121.813 kb on + strand at 121.814 kb on - strand at 121.814 kb on - strand at 121.814 kb on - strand at 121.816 kb on + strand at 121.816 kb on + strand at 121.817 kb on - strand at 121.817 kb on - strand at 121.817 kb on - strand at 121.817 kb on - strand at 121.817 kb on - strand at 121.846 kb on - strand at 121.846 kb on - strand at 121.846 kb on - strand at 121.846 kb on - strand at 121.846 kb on - strand at 121.926 kb on - strand at 121.926 kb on - strand at 122.082 kb on + strand at 122.094 kb on + strand at 122.094 kb on + strand at 122.094 kb on + strand at 122.096 kb on + strand at 122.166 kb on + strand, within IAI46_00535 at 122.167 kb on - strand, within IAI46_00535 at 122.358 kb on + strand, within IAI46_00535 at 122.358 kb on + strand, within IAI46_00535 at 122.432 kb on + strand, within IAI46_00535 at 122.432 kb on + strand, within IAI46_00535 at 122.432 kb on + strand, within IAI46_00535 at 122.433 kb on - strand, within IAI46_00535 at 122.433 kb on - strand, within IAI46_00535 at 122.433 kb on - strand, within IAI46_00535 at 122.433 kb on - strand, within IAI46_00535 at 122.535 kb on + strand, within IAI46_00535 at 122.536 kb on - strand, within IAI46_00535 at 122.536 kb on - strand, within IAI46_00535 at 122.536 kb on - strand, within IAI46_00535 at 122.540 kb on - strand, within IAI46_00535 at 122.540 kb on - strand, within IAI46_00535 at 122.715 kb on + strand, within IAI46_00535 at 122.715 kb on + strand, within IAI46_00535 at 122.716 kb on - strand, within IAI46_00535 at 122.716 kb on - strand, within IAI46_00535 at 122.716 kb on - strand, within IAI46_00535 at 122.733 kb on + strand, within IAI46_00535 at 122.734 kb on - strand, within IAI46_00535 at 122.771 kb on + strand, within IAI46_00535 at 122.772 kb on - strand, within IAI46_00535 at 122.772 kb on - strand, within IAI46_00535 at 122.801 kb on + strand, within IAI46_00535 at 122.802 kb on - strand, within IAI46_00535 at 122.802 kb on - strand, within IAI46_00535 at 122.802 kb on - strand, within IAI46_00535 at 122.802 kb on - strand, within IAI46_00535 at 122.813 kb on - strand, within IAI46_00535 at 122.954 kb on + strand, within IAI46_00535 at 122.954 kb on + strand, within IAI46_00535 at 122.954 kb on + strand, within IAI46_00535 at 122.955 kb on - strand, within IAI46_00535
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30 remove 118,707 + IAI46_00525 0.65 -1.5 118,707 + IAI46_00525 0.65 +0.6 118,707 + IAI46_00525 0.65 +0.1 118,707 + IAI46_00525 0.65 +0.3 118,707 + IAI46_00525 0.65 -1.2 118,707 + IAI46_00525 0.65 -0.2 118,708 - IAI46_00525 0.65 -1.0 118,708 - IAI46_00525 0.65 -0.1 118,708 - IAI46_00525 0.65 -0.4 118,708 - IAI46_00525 0.65 -1.2 118,708 - IAI46_00525 0.65 -2.6 118,708 - IAI46_00525 0.65 +0.6 118,721 + IAI46_00525 0.65 -0.9 118,721 + IAI46_00525 0.65 -0.2 118,722 - IAI46_00525 0.65 +0.5 118,722 - IAI46_00525 0.65 -0.6 118,722 - IAI46_00525 0.65 +2.1 118,722 - IAI46_00525 0.65 -0.4 118,751 + IAI46_00525 0.66 -0.8 118,802 - IAI46_00525 0.68 +2.3 118,802 - IAI46_00525 0.68 +0.9 118,812 + IAI46_00525 0.69 +1.7 118,812 + IAI46_00525 0.69 -0.6 118,812 + IAI46_00525 0.69 -1.0 118,813 - IAI46_00525 0.69 -0.6 118,814 + IAI46_00525 0.69 +0.4 118,929 + IAI46_00525 0.73 -0.7 118,929 + IAI46_00525 0.73 +0.0 118,930 - IAI46_00525 0.73 +0.1 118,930 - IAI46_00525 0.73 +0.8 118,930 - IAI46_00525 0.73 +0.6 118,931 + IAI46_00525 0.73 -0.5 118,931 + IAI46_00525 0.73 -0.8 118,931 + IAI46_00525 0.73 -1.8 118,931 + IAI46_00525 0.73 +0.5 118,931 + IAI46_00525 0.73 -2.2 118,931 + IAI46_00525 0.73 -2.9 118,931 + IAI46_00525 0.73 -0.9 118,932 - IAI46_00525 0.73 +2.2 118,932 - IAI46_00525 0.73 +0.3 118,932 - IAI46_00525 0.73 -0.4 118,932 - IAI46_00525 0.73 -1.9 119,043 + IAI46_00525 0.78 -1.6 119,043 + IAI46_00525 0.78 -0.7 119,043 + IAI46_00525 0.78 -0.1 119,044 - IAI46_00525 0.78 +0.2 119,044 - IAI46_00525 0.78 +2.9 119,044 - IAI46_00525 0.78 -0.2 119,044 - IAI46_00525 0.78 +0.8 119,044 - IAI46_00525 0.78 +0.4 119,084 - IAI46_00525 0.79 +0.1 119,171 + IAI46_00525 0.83 +0.4 119,172 - IAI46_00525 0.83 +0.8 119,172 - IAI46_00525 0.83 +0.8 119,280 + IAI46_00525 0.87 +0.2 119,280 + IAI46_00525 0.87 -0.5 119,280 + IAI46_00525 0.87 +0.6 119,333 + IAI46_00525 0.89 +1.3 119,433 - +0.5 119,481 + +0.5 119,481 + -1.5 119,485 + -0.5 119,485 + +2.3 119,485 + -1.0 119,485 + +1.6 119,485 + +0.3 119,485 + -1.1 119,485 + -0.2 119,485 + -1.1 119,485 + -0.7 119,486 - +0.2 119,486 - -0.1 119,486 - +0.3 119,486 - +0.2 119,486 - +0.6 119,486 - -1.1 119,486 - +0.1 119,486 - -0.3 119,486 - -2.2 119,489 + +0.3 119,489 + -2.7 119,490 - -1.1 119,499 + +0.7 119,499 + +0.3 119,500 - +1.7 119,568 - +0.6 119,620 + -1.8 119,620 + -1.6 119,620 + +1.5 119,620 + -0.5 119,620 + -0.3 119,620 + -1.4 119,621 - +2.1 119,621 - +0.1 119,621 - +0.3 119,622 + +0.1 119,623 - +1.8 119,660 - +2.0 119,660 - -0.6 119,660 - +1.9 119,660 - +2.6 119,661 + -0.5 119,661 + -0.5 119,662 - -1.6 119,662 - +0.2 119,662 - -0.4 119,676 + -0.9 119,677 - -0.4 119,677 - +2.5 119,694 - -0.7 119,703 + -0.3 119,717 + +0.3 119,717 + -1.0 119,717 + +0.2 119,717 + +0.1 119,877 + +0.0 120,037 + IAI46_00530 0.15 -0.4 120,038 - IAI46_00530 0.16 +1.0 120,043 - IAI46_00530 0.16 -0.5 120,043 - IAI46_00530 0.16 +0.5 120,043 - IAI46_00530 0.16 -0.7 120,043 - IAI46_00530 0.16 +0.1 120,116 + IAI46_00530 0.19 -1.3 120,128 - IAI46_00530 0.19 +1.3 120,129 + IAI46_00530 0.19 +0.6 120,361 - IAI46_00530 0.30 +1.9 120,444 - IAI46_00530 0.33 +0.9 120,445 + IAI46_00530 0.33 +1.0 120,445 + IAI46_00530 0.33 +0.5 120,445 + IAI46_00530 0.33 -0.7 120,445 + IAI46_00530 0.33 +1.7 120,445 + IAI46_00530 0.33 +0.1 120,445 + IAI46_00530 0.33 -3.1 120,445 + IAI46_00530 0.33 +2.2 120,446 - IAI46_00530 0.33 -1.0 120,446 - IAI46_00530 0.33 +1.5 120,551 + IAI46_00530 0.38 +0.8 120,551 + IAI46_00530 0.38 -2.0 120,551 + IAI46_00530 0.38 -0.7 120,552 - IAI46_00530 0.38 -0.7 120,571 + IAI46_00530 0.39 +0.4 120,571 + IAI46_00530 0.39 +1.6 120,571 + IAI46_00530 0.39 +0.8 120,572 - IAI46_00530 0.39 +1.8 120,648 + IAI46_00530 0.42 +2.2 120,648 + IAI46_00530 0.42 -1.5 120,649 - IAI46_00530 0.42 +0.4 120,712 + IAI46_00530 0.45 +1.9 120,772 + IAI46_00530 0.47 +1.0 120,773 - IAI46_00530 0.47 +0.7 120,773 - IAI46_00530 0.47 +0.4 120,873 + IAI46_00530 0.52 -1.1 120,874 - IAI46_00530 0.52 -1.1 120,874 - IAI46_00530 0.52 +1.1 120,886 + IAI46_00530 0.52 -2.3 120,887 - IAI46_00530 0.52 +1.9 120,887 - IAI46_00530 0.52 -0.9 120,887 - IAI46_00530 0.52 +0.9 120,887 - IAI46_00530 0.52 -1.5 120,887 - IAI46_00530 0.52 +1.1 120,895 - IAI46_00530 0.53 +2.3 120,895 - IAI46_00530 0.53 -0.4 120,961 + IAI46_00530 0.56 -0.4 120,961 + IAI46_00530 0.56 +0.1 120,961 + IAI46_00530 0.56 +0.2 121,050 + IAI46_00530 0.59 -0.4 121,051 - IAI46_00530 0.60 -0.3 121,102 + IAI46_00530 0.62 -2.5 121,147 + IAI46_00530 0.64 +0.7 121,148 - IAI46_00530 0.64 +1.5 121,218 + IAI46_00530 0.67 -0.3 121,219 - IAI46_00530 0.67 +0.2 121,440 + IAI46_00530 0.76 -0.6 121,458 + IAI46_00530 0.77 +0.2 121,459 - IAI46_00530 0.77 +0.5 121,482 + IAI46_00530 0.78 +0.0 121,482 + IAI46_00530 0.78 +1.3 121,482 + IAI46_00530 0.78 +0.4 121,483 - IAI46_00530 0.78 -0.4 121,702 + IAI46_00530 0.88 -1.7 121,813 + +0.8 121,813 + -1.3 121,813 + +0.7 121,814 - +0.5 121,814 - +1.2 121,814 - -0.0 121,816 + +0.0 121,816 + +1.7 121,817 - +0.7 121,817 - -0.4 121,817 - +0.9 121,817 - +0.1 121,817 - +1.6 121,846 - -1.5 121,846 - +1.7 121,846 - +0.5 121,846 - +0.8 121,846 - -1.6 121,926 - +0.5 121,926 - +1.7 122,082 + +0.8 122,094 + -2.3 122,094 + -1.2 122,094 + +0.4 122,096 + +1.4 122,166 + IAI46_00535 0.16 -0.1 122,167 - IAI46_00535 0.16 +0.6 122,358 + IAI46_00535 0.33 +1.2 122,358 + IAI46_00535 0.33 +0.2 122,432 + IAI46_00535 0.40 +1.1 122,432 + IAI46_00535 0.40 +1.4 122,432 + IAI46_00535 0.40 +0.0 122,433 - IAI46_00535 0.40 +1.9 122,433 - IAI46_00535 0.40 +0.9 122,433 - IAI46_00535 0.40 -0.1 122,433 - IAI46_00535 0.40 +0.4 122,535 + IAI46_00535 0.49 -3.0 122,536 - IAI46_00535 0.49 +3.2 122,536 - IAI46_00535 0.49 +0.6 122,536 - IAI46_00535 0.49 -0.7 122,540 - IAI46_00535 0.50 -1.2 122,540 - IAI46_00535 0.50 -0.5 122,715 + IAI46_00535 0.65 +0.5 122,715 + IAI46_00535 0.65 -1.7 122,716 - IAI46_00535 0.65 +0.3 122,716 - IAI46_00535 0.65 -0.7 122,716 - IAI46_00535 0.65 +0.1 122,733 + IAI46_00535 0.67 -2.1 122,734 - IAI46_00535 0.67 -2.3 122,771 + IAI46_00535 0.70 -1.3 122,772 - IAI46_00535 0.70 +1.4 122,772 - IAI46_00535 0.70 +1.5 122,801 + IAI46_00535 0.73 +0.9 122,802 - IAI46_00535 0.73 -0.4 122,802 - IAI46_00535 0.73 -1.4 122,802 - IAI46_00535 0.73 -0.1 122,802 - IAI46_00535 0.73 -2.0 122,813 - IAI46_00535 0.74 -0.5 122,954 + IAI46_00535 0.87 +0.6 122,954 + IAI46_00535 0.87 -0.5 122,954 + IAI46_00535 0.87 -0.2 122,955 - IAI46_00535 0.87 +0.2
Or see this region's nucleotide sequence