Experiment: Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00290 and IAI46_00295 overlap by 23 nucleotides IAI46_00295 and IAI46_00300 are separated by 313 nucleotides
IAI46_00290: IAI46_00290 - xylose ABC transporter ATP-binding protein, at 67,695 to 69,236
_00290
IAI46_00295: IAI46_00295 - sugar ABC transporter permease, at 69,214 to 70,398
_00295
IAI46_00300: IAI46_00300 - DNA-binding transcriptional regulator, at 70,712 to 71,890
_00300
Position (kb) 69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 68.279 kb on + strand, within IAI46_00290 at 68.279 kb on + strand, within IAI46_00290 at 68.283 kb on + strand, within IAI46_00290 at 68.284 kb on - strand, within IAI46_00290 at 68.284 kb on - strand, within IAI46_00290 at 68.284 kb on - strand, within IAI46_00290 at 68.434 kb on - strand, within IAI46_00290 at 68.434 kb on - strand, within IAI46_00290 at 68.455 kb on + strand, within IAI46_00290 at 68.455 kb on + strand, within IAI46_00290 at 68.455 kb on + strand, within IAI46_00290 at 68.456 kb on - strand, within IAI46_00290 at 68.456 kb on - strand, within IAI46_00290 at 68.456 kb on - strand, within IAI46_00290 at 68.560 kb on + strand, within IAI46_00290 at 68.625 kb on + strand, within IAI46_00290 at 68.651 kb on + strand, within IAI46_00290 at 68.651 kb on + strand, within IAI46_00290 at 68.675 kb on + strand, within IAI46_00290 at 68.704 kb on - strand, within IAI46_00290 at 68.704 kb on - strand, within IAI46_00290 at 68.774 kb on + strand, within IAI46_00290 at 68.774 kb on + strand, within IAI46_00290 at 68.774 kb on + strand, within IAI46_00290 at 68.775 kb on - strand, within IAI46_00290 at 68.775 kb on - strand, within IAI46_00290 at 69.034 kb on + strand, within IAI46_00290 at 69.050 kb on - strand, within IAI46_00290 at 69.308 kb on + strand at 69.308 kb on + strand at 69.324 kb on - strand at 69.333 kb on + strand, within IAI46_00295 at 69.333 kb on + strand, within IAI46_00295 at 69.333 kb on + strand, within IAI46_00295 at 69.333 kb on + strand, within IAI46_00295 at 69.334 kb on - strand, within IAI46_00295 at 69.334 kb on - strand, within IAI46_00295 at 69.345 kb on + strand, within IAI46_00295 at 69.352 kb on - strand, within IAI46_00295 at 69.367 kb on + strand, within IAI46_00295 at 69.368 kb on - strand, within IAI46_00295 at 69.381 kb on + strand, within IAI46_00295 at 69.381 kb on + strand, within IAI46_00295 at 69.381 kb on + strand, within IAI46_00295 at 69.381 kb on + strand, within IAI46_00295 at 69.382 kb on - strand, within IAI46_00295 at 69.382 kb on - strand, within IAI46_00295 at 69.384 kb on + strand, within IAI46_00295 at 69.384 kb on + strand, within IAI46_00295 at 69.384 kb on + strand, within IAI46_00295 at 69.743 kb on - strand, within IAI46_00295 at 69.743 kb on - strand, within IAI46_00295 at 69.830 kb on + strand, within IAI46_00295 at 69.830 kb on + strand, within IAI46_00295 at 69.830 kb on + strand, within IAI46_00295 at 69.900 kb on - strand, within IAI46_00295 at 69.942 kb on + strand, within IAI46_00295 at 69.942 kb on + strand, within IAI46_00295 at 69.984 kb on - strand, within IAI46_00295 at 69.984 kb on - strand, within IAI46_00295 at 69.987 kb on + strand, within IAI46_00295 at 69.987 kb on + strand, within IAI46_00295 at 69.987 kb on + strand, within IAI46_00295 at 69.988 kb on - strand, within IAI46_00295 at 69.988 kb on - strand, within IAI46_00295 at 69.988 kb on - strand, within IAI46_00295 at 70.021 kb on + strand, within IAI46_00295 at 70.038 kb on + strand, within IAI46_00295 at 70.039 kb on - strand, within IAI46_00295 at 70.039 kb on - strand, within IAI46_00295 at 70.177 kb on - strand, within IAI46_00295 at 70.238 kb on + strand, within IAI46_00295 at 70.239 kb on - strand, within IAI46_00295 at 70.272 kb on + strand, within IAI46_00295 at 70.273 kb on - strand, within IAI46_00295 at 70.330 kb on + strand at 70.330 kb on + strand at 70.331 kb on - strand at 70.331 kb on - strand at 70.331 kb on - strand at 70.331 kb on - strand at 70.397 kb on - strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.403 kb on - strand at 70.403 kb on - strand at 70.403 kb on - strand at 70.403 kb on - strand at 70.403 kb on - strand at 70.403 kb on - strand at 70.404 kb on + strand at 70.405 kb on - strand at 70.405 kb on - strand at 70.405 kb on - strand at 70.413 kb on + strand at 70.413 kb on + strand at 70.414 kb on - strand at 70.414 kb on - strand at 70.438 kb on + strand at 70.438 kb on + strand at 70.466 kb on + strand at 70.467 kb on - strand at 70.469 kb on + strand at 70.470 kb on - strand at 70.470 kb on - strand at 70.470 kb on - strand at 70.504 kb on + strand at 70.504 kb on + strand at 70.505 kb on - strand at 70.505 kb on - strand at 70.516 kb on + strand at 70.517 kb on - strand at 70.517 kb on - strand at 70.527 kb on + strand at 70.527 kb on + strand at 70.528 kb on - strand at 70.528 kb on - strand at 70.546 kb on + strand at 70.546 kb on + strand at 70.547 kb on - strand at 70.547 kb on - strand at 70.585 kb on + strand at 70.635 kb on - strand at 70.676 kb on + strand at 70.688 kb on - strand at 70.735 kb on + strand at 70.735 kb on + strand at 70.735 kb on + strand at 70.736 kb on - strand at 70.736 kb on - strand at 70.757 kb on - strand at 70.763 kb on + strand at 70.763 kb on + strand at 70.764 kb on - strand at 70.796 kb on + strand at 70.797 kb on - strand at 70.800 kb on + strand at 70.801 kb on - strand at 70.832 kb on - strand, within IAI46_00300 at 70.933 kb on + strand, within IAI46_00300 at 70.934 kb on - strand, within IAI46_00300 at 70.934 kb on - strand, within IAI46_00300 at 70.970 kb on + strand, within IAI46_00300 at 70.970 kb on + strand, within IAI46_00300 at 70.971 kb on - strand, within IAI46_00300 at 70.971 kb on - strand, within IAI46_00300 at 70.971 kb on - strand, within IAI46_00300 at 70.989 kb on - strand, within IAI46_00300 at 71.003 kb on + strand, within IAI46_00300 at 71.003 kb on + strand, within IAI46_00300 at 71.003 kb on + strand, within IAI46_00300 at 71.004 kb on - strand, within IAI46_00300 at 71.004 kb on - strand, within IAI46_00300 at 71.069 kb on - strand, within IAI46_00300 at 71.069 kb on - strand, within IAI46_00300 at 71.084 kb on + strand, within IAI46_00300 at 71.084 kb on + strand, within IAI46_00300 at 71.084 kb on + strand, within IAI46_00300 at 71.084 kb on + strand, within IAI46_00300 at 71.107 kb on + strand, within IAI46_00300 at 71.165 kb on + strand, within IAI46_00300 at 71.165 kb on + strand, within IAI46_00300 at 71.165 kb on + strand, within IAI46_00300 at 71.180 kb on + strand, within IAI46_00300 at 71.244 kb on + strand, within IAI46_00300 at 71.387 kb on + strand, within IAI46_00300 at 71.387 kb on + strand, within IAI46_00300
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=8weeks; Outgrowth=LB_kan30 remove 68,279 + IAI46_00290 0.38 +0.0 68,279 + IAI46_00290 0.38 -2.7 68,283 + IAI46_00290 0.38 -1.2 68,284 - IAI46_00290 0.38 +1.1 68,284 - IAI46_00290 0.38 -0.1 68,284 - IAI46_00290 0.38 +1.3 68,434 - IAI46_00290 0.48 +3.1 68,434 - IAI46_00290 0.48 +0.1 68,455 + IAI46_00290 0.49 -0.2 68,455 + IAI46_00290 0.49 +0.4 68,455 + IAI46_00290 0.49 -3.1 68,456 - IAI46_00290 0.49 +0.4 68,456 - IAI46_00290 0.49 +0.3 68,456 - IAI46_00290 0.49 -0.0 68,560 + IAI46_00290 0.56 -1.1 68,625 + IAI46_00290 0.60 +0.4 68,651 + IAI46_00290 0.62 -0.8 68,651 + IAI46_00290 0.62 +1.2 68,675 + IAI46_00290 0.64 -3.2 68,704 - IAI46_00290 0.65 +2.8 68,704 - IAI46_00290 0.65 +0.1 68,774 + IAI46_00290 0.70 -0.3 68,774 + IAI46_00290 0.70 +0.5 68,774 + IAI46_00290 0.70 +1.1 68,775 - IAI46_00290 0.70 +0.4 68,775 - IAI46_00290 0.70 +0.9 69,034 + IAI46_00290 0.87 +2.3 69,050 - IAI46_00290 0.88 -0.5 69,308 + +1.2 69,308 + +0.4 69,324 - +0.1 69,333 + IAI46_00295 0.10 +0.9 69,333 + IAI46_00295 0.10 +1.3 69,333 + IAI46_00295 0.10 +2.0 69,333 + IAI46_00295 0.10 -0.8 69,334 - IAI46_00295 0.10 -0.0 69,334 - IAI46_00295 0.10 -0.6 69,345 + IAI46_00295 0.11 -2.1 69,352 - IAI46_00295 0.12 -0.1 69,367 + IAI46_00295 0.13 +0.0 69,368 - IAI46_00295 0.13 -0.6 69,381 + IAI46_00295 0.14 +0.1 69,381 + IAI46_00295 0.14 -0.9 69,381 + IAI46_00295 0.14 +0.9 69,381 + IAI46_00295 0.14 +0.4 69,382 - IAI46_00295 0.14 +2.2 69,382 - IAI46_00295 0.14 -0.7 69,384 + IAI46_00295 0.14 +0.1 69,384 + IAI46_00295 0.14 +1.4 69,384 + IAI46_00295 0.14 -0.6 69,743 - IAI46_00295 0.45 -1.8 69,743 - IAI46_00295 0.45 -0.6 69,830 + IAI46_00295 0.52 -1.0 69,830 + IAI46_00295 0.52 +0.2 69,830 + IAI46_00295 0.52 -0.1 69,900 - IAI46_00295 0.58 -1.2 69,942 + IAI46_00295 0.61 +0.3 69,942 + IAI46_00295 0.61 +1.2 69,984 - IAI46_00295 0.65 -0.9 69,984 - IAI46_00295 0.65 +1.2 69,987 + IAI46_00295 0.65 +0.8 69,987 + IAI46_00295 0.65 -2.0 69,987 + IAI46_00295 0.65 -0.3 69,988 - IAI46_00295 0.65 -1.6 69,988 - IAI46_00295 0.65 +1.0 69,988 - IAI46_00295 0.65 -0.5 70,021 + IAI46_00295 0.68 -2.3 70,038 + IAI46_00295 0.70 +1.9 70,039 - IAI46_00295 0.70 -1.5 70,039 - IAI46_00295 0.70 +2.1 70,177 - IAI46_00295 0.81 -1.4 70,238 + IAI46_00295 0.86 -2.0 70,239 - IAI46_00295 0.86 +0.3 70,272 + IAI46_00295 0.89 -0.4 70,273 - IAI46_00295 0.89 +0.6 70,330 + -0.6 70,330 + +0.2 70,331 - +2.3 70,331 - +1.0 70,331 - +0.3 70,331 - +1.5 70,397 - -1.7 70,402 + -1.3 70,402 + -0.5 70,402 + -0.1 70,402 + +1.9 70,402 + -1.2 70,402 + -2.4 70,402 + -0.5 70,402 + +0.7 70,402 + -0.1 70,402 + +1.0 70,402 + -0.2 70,403 - +0.6 70,403 - +0.2 70,403 - -1.2 70,403 - +0.9 70,403 - +1.1 70,403 - +1.9 70,404 + +0.9 70,405 - -2.2 70,405 - -2.5 70,405 - -0.1 70,413 + -0.0 70,413 + -0.7 70,414 - +0.0 70,414 - +1.2 70,438 + +0.5 70,438 + -0.8 70,466 + +0.0 70,467 - -1.9 70,469 + -0.8 70,470 - -1.6 70,470 - +0.5 70,470 - -2.7 70,504 + +0.0 70,504 + -2.5 70,505 - +1.0 70,505 - -0.5 70,516 + +2.2 70,517 - +2.2 70,517 - -0.4 70,527 + -0.1 70,527 + -1.3 70,528 - +0.6 70,528 - -1.3 70,546 + -0.7 70,546 + +0.9 70,547 - +1.7 70,547 - +0.4 70,585 + +0.2 70,635 - -0.8 70,676 + +1.5 70,688 - -0.5 70,735 + +1.4 70,735 + +1.2 70,735 + -2.0 70,736 - +1.4 70,736 - +1.3 70,757 - +2.1 70,763 + -0.8 70,763 + -1.1 70,764 - -0.3 70,796 + +1.1 70,797 - +1.2 70,800 + -0.2 70,801 - +2.1 70,832 - IAI46_00300 0.10 +0.0 70,933 + IAI46_00300 0.19 +0.1 70,934 - IAI46_00300 0.19 +1.5 70,934 - IAI46_00300 0.19 +0.8 70,970 + IAI46_00300 0.22 +1.5 70,970 + IAI46_00300 0.22 -0.6 70,971 - IAI46_00300 0.22 +1.2 70,971 - IAI46_00300 0.22 -2.2 70,971 - IAI46_00300 0.22 +0.7 70,989 - IAI46_00300 0.23 -1.3 71,003 + IAI46_00300 0.25 -2.4 71,003 + IAI46_00300 0.25 +0.2 71,003 + IAI46_00300 0.25 +0.1 71,004 - IAI46_00300 0.25 +1.1 71,004 - IAI46_00300 0.25 +0.9 71,069 - IAI46_00300 0.30 +1.2 71,069 - IAI46_00300 0.30 +0.2 71,084 + IAI46_00300 0.32 -0.7 71,084 + IAI46_00300 0.32 +0.5 71,084 + IAI46_00300 0.32 +0.0 71,084 + IAI46_00300 0.32 +0.0 71,107 + IAI46_00300 0.34 -2.8 71,165 + IAI46_00300 0.38 +0.4 71,165 + IAI46_00300 0.38 +0.5 71,165 + IAI46_00300 0.38 +0.5 71,180 + IAI46_00300 0.40 +0.4 71,244 + IAI46_00300 0.45 +0.7 71,387 + IAI46_00300 0.57 +1.6 71,387 + IAI46_00300 0.57 -1.6
Or see this region's nucleotide sequence