Strain Fitness in Variovorax sp. SCN45 around GFF918

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF917 and GFF918 are separated by 25 nucleotidesGFF918 and GFF919 are separated by 129 nucleotides GFF917 - hypothetical protein, at 229,165 to 230,265 GFF917 GFF918 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 230,291 to 231,646 GFF918 GFF919 - hypothetical protein, at 231,776 to 232,744 GFF919 Position (kb) 230 231 232Strain fitness (log2 ratio) -1 0 1at 229.644 kb on - strand, within GFF917at 229.644 kb on - strand, within GFF917at 229.973 kb on + strand, within GFF917at 229.974 kb on - strand, within GFF917at 229.974 kb on - strand, within GFF917at 230.157 kb on - strandat 230.201 kb on + strandat 230.679 kb on + strand, within GFF918at 230.679 kb on + strand, within GFF918at 230.679 kb on + strand, within GFF918at 230.679 kb on + strand, within GFF918at 230.680 kb on - strand, within GFF918at 230.680 kb on - strand, within GFF918at 230.685 kb on + strand, within GFF918at 230.685 kb on + strand, within GFF918at 230.685 kb on + strand, within GFF918at 230.686 kb on - strand, within GFF918at 231.228 kb on + strand, within GFF918at 231.258 kb on + strand, within GFF918at 231.259 kb on - strand, within GFF918at 231.406 kb on - strand, within GFF918at 231.525 kb on + strandat 231.526 kb on - strandat 231.526 kb on - strandat 231.528 kb on + strandat 231.528 kb on + strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.737 kb on + strandat 231.737 kb on + strandat 231.737 kb on + strandat 231.737 kb on + strandat 231.737 kb on + strandat 231.738 kb on - strandat 231.738 kb on - strandat 231.738 kb on - strandat 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.882 kb on - strand, within GFF919at 231.882 kb on - strand, within GFF919at 231.882 kb on - strand, within GFF919at 231.911 kb on + strand, within GFF919at 231.912 kb on - strand, within GFF919at 232.040 kb on + strand, within GFF919at 232.040 kb on + strand, within GFF919at 232.040 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.116 kb on - strand, within GFF919at 232.116 kb on - strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.265 kb on + strand, within GFF919at 232.265 kb on + strand, within GFF919at 232.265 kb on + strand, within GFF919at 232.266 kb on - strand, within GFF919at 232.266 kb on - strand, within GFF919at 232.322 kb on + strand, within GFF919at 232.323 kb on - strand, within GFF919at 232.323 kb on - strand, within GFF919at 232.323 kb on - strand, within GFF919at 232.443 kb on - strand, within GFF919

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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229,644 - GFF917 0.44 -0.8
229,644 - GFF917 0.44 -1.1
229,973 + GFF917 0.73 +0.4
229,974 - GFF917 0.73 -0.3
229,974 - GFF917 0.73 -0.9
230,157 - -0.4
230,201 + +0.5
230,679 + GFF918 0.29 -0.2
230,679 + GFF918 0.29 +1.1
230,679 + GFF918 0.29 +0.9
230,679 + GFF918 0.29 -1.1
230,680 - GFF918 0.29 -0.9
230,680 - GFF918 0.29 +0.9
230,685 + GFF918 0.29 -0.5
230,685 + GFF918 0.29 +0.6
230,685 + GFF918 0.29 -0.1
230,686 - GFF918 0.29 -0.4
231,228 + GFF918 0.69 +0.1
231,258 + GFF918 0.71 +0.2
231,259 - GFF918 0.71 -0.5
231,406 - GFF918 0.82 +0.0
231,525 + -0.1
231,526 - +0.5
231,526 - +0.1
231,528 + -0.5
231,528 + +1.3
231,529 - -0.7
231,529 - -0.3
231,529 - -0.8
231,529 - +1.5
231,529 - +0.5
231,529 - +0.4
231,529 - -0.3
231,529 - +0.0
231,737 + +0.2
231,737 + +0.2
231,737 + -0.6
231,737 + -0.1
231,737 + +0.1
231,738 - +0.0
231,738 - -0.1
231,738 - -0.3
231,881 + GFF919 0.11 -0.4
231,881 + GFF919 0.11 -0.8
231,881 + GFF919 0.11 -0.6
231,881 + GFF919 0.11 +0.8
231,881 + GFF919 0.11 +1.0
231,882 - GFF919 0.11 +0.0
231,882 - GFF919 0.11 -0.3
231,882 - GFF919 0.11 -0.4
231,911 + GFF919 0.14 -0.3
231,912 - GFF919 0.14 +0.6
232,040 + GFF919 0.27 -1.0
232,040 + GFF919 0.27 +0.3
232,040 + GFF919 0.27 +1.3
232,115 + GFF919 0.35 -0.9
232,115 + GFF919 0.35 -0.1
232,115 + GFF919 0.35 -0.1
232,115 + GFF919 0.35 +0.9
232,115 + GFF919 0.35 -0.0
232,115 + GFF919 0.35 +1.0
232,115 + GFF919 0.35 -0.3
232,115 + GFF919 0.35 -1.2
232,116 - GFF919 0.35 -0.3
232,116 - GFF919 0.35 -0.1
232,190 + GFF919 0.43 -1.0
232,190 + GFF919 0.43 +0.2
232,190 + GFF919 0.43 -0.4
232,190 + GFF919 0.43 -1.5
232,191 - GFF919 0.43 -0.9
232,191 - GFF919 0.43 -0.9
232,191 - GFF919 0.43 -0.1
232,191 - GFF919 0.43 +0.4
232,191 - GFF919 0.43 -1.3
232,191 - GFF919 0.43 +0.5
232,191 - GFF919 0.43 -1.0
232,191 - GFF919 0.43 -0.2
232,265 + GFF919 0.50 -0.6
232,265 + GFF919 0.50 -0.9
232,265 + GFF919 0.50 +1.5
232,266 - GFF919 0.51 -0.9
232,266 - GFF919 0.51 +0.0
232,322 + GFF919 0.56 +0.1
232,323 - GFF919 0.56 +0.1
232,323 - GFF919 0.56 +0.1
232,323 - GFF919 0.56 -1.0
232,443 - GFF919 0.69 +0.4

Or see this region's nucleotide sequence