Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF914 and GFF915 are separated by 1 nucleotides GFF915 and GFF916 are separated by 18 nucleotides GFF916 and GFF917 are separated by 54 nucleotides
GFF914 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 225,711 to 226,526
GFF914
GFF915 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 226,528 to 227,472
GFF915
GFF916 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 227,491 to 229,110
GFF916
GFF917 - hypothetical protein, at 229,165 to 230,265
GFF917
Position (kb) 227
228
229
230 Strain fitness (log2 ratio) -1
0
1
2 at 226.505 kb on + strand at 226.529 kb on + strand at 226.529 kb on + strand at 226.562 kb on + strand at 226.563 kb on - strand at 226.595 kb on + strand at 226.596 kb on - strand at 226.596 kb on - strand at 226.596 kb on - strand at 226.596 kb on - strand at 226.838 kb on + strand, within GFF915 at 226.838 kb on + strand, within GFF915 at 226.839 kb on - strand, within GFF915 at 226.839 kb on - strand, within GFF915 at 226.934 kb on + strand, within GFF915 at 226.935 kb on - strand, within GFF915 at 226.974 kb on - strand, within GFF915 at 226.974 kb on - strand, within GFF915 at 226.974 kb on - strand, within GFF915 at 227.279 kb on + strand, within GFF915 at 227.279 kb on + strand, within GFF915 at 227.280 kb on - strand, within GFF915 at 227.280 kb on - strand, within GFF915 at 227.280 kb on - strand, within GFF915 at 227.280 kb on - strand, within GFF915 at 227.462 kb on + strand at 227.463 kb on - strand at 227.771 kb on + strand, within GFF916 at 227.822 kb on + strand, within GFF916 at 227.838 kb on - strand, within GFF916 at 227.930 kb on + strand, within GFF916 at 228.053 kb on + strand, within GFF916 at 228.053 kb on + strand, within GFF916 at 228.056 kb on + strand, within GFF916 at 228.314 kb on + strand, within GFF916 at 228.426 kb on - strand, within GFF916 at 228.452 kb on + strand, within GFF916 at 228.452 kb on + strand, within GFF916 at 228.453 kb on - strand, within GFF916 at 228.483 kb on - strand, within GFF916 at 228.716 kb on + strand, within GFF916 at 228.717 kb on - strand, within GFF916 at 228.800 kb on + strand, within GFF916 at 228.800 kb on + strand, within GFF916 at 228.801 kb on - strand, within GFF916 at 228.801 kb on - strand, within GFF916 at 228.967 kb on + strand at 228.968 kb on - strand at 228.968 kb on - strand at 229.102 kb on + strand at 229.103 kb on - strand at 229.176 kb on - strand at 229.176 kb on - strand at 229.644 kb on - strand, within GFF917 at 229.644 kb on - strand, within GFF917 at 229.973 kb on + strand, within GFF917 at 229.974 kb on - strand, within GFF917 at 229.974 kb on - strand, within GFF917
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 226,505 + -0.9 226,529 + -0.6 226,529 + -0.7 226,562 + -1.1 226,563 - +1.5 226,595 + +0.4 226,596 - -0.9 226,596 - -0.8 226,596 - +0.1 226,596 - +0.2 226,838 + GFF915 0.33 +1.1 226,838 + GFF915 0.33 -1.2 226,839 - GFF915 0.33 +0.2 226,839 - GFF915 0.33 +0.1 226,934 + GFF915 0.43 -0.0 226,935 - GFF915 0.43 -0.7 226,974 - GFF915 0.47 -0.2 226,974 - GFF915 0.47 -0.7 226,974 - GFF915 0.47 -0.8 227,279 + GFF915 0.79 +0.2 227,279 + GFF915 0.79 -0.2 227,280 - GFF915 0.80 -0.6 227,280 - GFF915 0.80 -0.7 227,280 - GFF915 0.80 +0.2 227,280 - GFF915 0.80 -0.0 227,462 + -1.7 227,463 - -1.1 227,771 + GFF916 0.17 +0.2 227,822 + GFF916 0.20 +0.2 227,838 - GFF916 0.21 +0.1 227,930 + GFF916 0.27 +0.5 228,053 + GFF916 0.35 -0.4 228,053 + GFF916 0.35 +2.0 228,056 + GFF916 0.35 +0.3 228,314 + GFF916 0.51 +0.4 228,426 - GFF916 0.58 -0.4 228,452 + GFF916 0.59 -0.4 228,452 + GFF916 0.59 +0.3 228,453 - GFF916 0.59 +2.0 228,483 - GFF916 0.61 +0.3 228,716 + GFF916 0.76 -0.5 228,717 - GFF916 0.76 -0.9 228,800 + GFF916 0.81 +0.6 228,800 + GFF916 0.81 +0.3 228,801 - GFF916 0.81 +0.2 228,801 - GFF916 0.81 -0.8 228,967 + -0.5 228,968 - +0.0 228,968 - +0.5 229,102 + -0.9 229,103 - +0.1 229,176 - -1.6 229,176 - +0.1 229,644 - GFF917 0.44 -0.8 229,644 - GFF917 0.44 -1.1 229,973 + GFF917 0.73 +0.4 229,974 - GFF917 0.73 -0.3 229,974 - GFF917 0.73 -0.9
Or see this region's nucleotide sequence