Strain Fitness in Variovorax sp. SCN45 around GFF910

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF909 and GFF910 are separated by 16 nucleotidesGFF910 and GFF911 are separated by 39 nucleotidesGFF911 and GFF912 are separated by 14 nucleotides GFF909 - Alcohol dehydrogenase (EC 1.1.1.1), at 219,554 to 220,609 GFF909 GFF910 - hypothetical protein, at 220,626 to 222,359 GFF910 GFF911 - KEGG: transcriptional regulator, at 222,399 to 223,046 GFF911 GFF912 - putative acetyl esterase, at 223,061 to 224,053 GFF912 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -2 -1 0 1 2at 219.662 kb on + strand, within GFF909at 219.662 kb on + strand, within GFF909at 219.663 kb on - strand, within GFF909at 219.663 kb on - strand, within GFF909at 219.663 kb on - strand, within GFF909at 219.722 kb on + strand, within GFF909at 219.722 kb on + strand, within GFF909at 219.722 kb on + strand, within GFF909at 219.899 kb on + strand, within GFF909at 219.899 kb on + strand, within GFF909at 219.900 kb on - strand, within GFF909at 219.900 kb on - strand, within GFF909at 219.900 kb on - strand, within GFF909at 219.900 kb on - strand, within GFF909at 219.900 kb on - strand, within GFF909at 219.900 kb on - strand, within GFF909at 219.900 kb on - strand, within GFF909at 220.049 kb on + strand, within GFF909at 220.049 kb on + strand, within GFF909at 220.050 kb on - strand, within GFF909at 220.542 kb on - strandat 220.542 kb on - strandat 220.628 kb on - strandat 220.628 kb on - strandat 220.628 kb on - strandat 220.664 kb on - strandat 220.720 kb on + strandat 220.720 kb on + strandat 220.720 kb on + strandat 220.720 kb on + strandat 220.720 kb on + strandat 220.721 kb on - strandat 220.721 kb on - strandat 220.721 kb on - strandat 221.129 kb on - strand, within GFF910at 221.584 kb on + strand, within GFF910at 221.585 kb on - strand, within GFF910at 221.585 kb on - strand, within GFF910at 221.626 kb on + strand, within GFF910at 221.626 kb on + strand, within GFF910at 221.626 kb on + strand, within GFF910at 221.627 kb on - strand, within GFF910at 221.627 kb on - strand, within GFF910at 221.920 kb on + strand, within GFF910at 221.920 kb on + strand, within GFF910at 222.523 kb on + strand, within GFF911at 222.524 kb on - strand, within GFF911at 222.524 kb on - strand, within GFF911at 222.524 kb on - strand, within GFF911at 222.524 kb on - strand, within GFF911at 222.524 kb on - strand, within GFF911at 222.589 kb on + strand, within GFF911at 222.589 kb on + strand, within GFF911at 222.629 kb on - strand, within GFF911at 222.629 kb on - strand, within GFF911at 222.740 kb on - strand, within GFF911at 222.740 kb on - strand, within GFF911at 222.740 kb on - strand, within GFF911at 222.740 kb on - strand, within GFF911at 222.740 kb on - strand, within GFF911at 222.772 kb on + strand, within GFF911at 222.772 kb on + strand, within GFF911at 222.772 kb on + strand, within GFF911at 222.772 kb on + strand, within GFF911at 222.773 kb on - strand, within GFF911at 222.773 kb on - strand, within GFF911at 222.773 kb on - strand, within GFF911at 223.027 kb on + strandat 223.027 kb on + strandat 223.027 kb on + strandat 223.027 kb on + strandat 223.028 kb on - strandat 223.028 kb on - strandat 223.042 kb on + strandat 223.042 kb on + strandat 223.042 kb on + strandat 223.042 kb on + strandat 223.042 kb on + strandat 223.043 kb on - strandat 223.043 kb on - strandat 223.043 kb on - strandat 223.043 kb on - strandat 223.043 kb on - strandat 223.043 kb on - strandat 223.078 kb on + strandat 223.079 kb on - strandat 223.091 kb on + strandat 223.091 kb on + strandat 223.092 kb on - strandat 223.351 kb on - strand, within GFF912

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
219,662 + GFF909 0.10 -1.8
219,662 + GFF909 0.10 +0.1
219,663 - GFF909 0.10 +0.6
219,663 - GFF909 0.10 -0.2
219,663 - GFF909 0.10 +0.2
219,722 + GFF909 0.16 -0.5
219,722 + GFF909 0.16 +0.3
219,722 + GFF909 0.16 +0.5
219,899 + GFF909 0.33 -0.3
219,899 + GFF909 0.33 -0.5
219,900 - GFF909 0.33 -0.4
219,900 - GFF909 0.33 +0.5
219,900 - GFF909 0.33 -0.0
219,900 - GFF909 0.33 -1.3
219,900 - GFF909 0.33 -0.1
219,900 - GFF909 0.33 -0.5
219,900 - GFF909 0.33 -0.2
220,049 + GFF909 0.47 -0.5
220,049 + GFF909 0.47 +1.0
220,050 - GFF909 0.47 -0.5
220,542 - +0.1
220,542 - -0.9
220,628 - -0.7
220,628 - +1.1
220,628 - -0.0
220,664 - -1.1
220,720 + +0.1
220,720 + -0.4
220,720 + +0.7
220,720 + -0.8
220,720 + -0.4
220,721 - -0.4
220,721 - -0.5
220,721 - -0.3
221,129 - GFF910 0.29 -0.1
221,584 + GFF910 0.55 -0.3
221,585 - GFF910 0.55 -0.2
221,585 - GFF910 0.55 -1.5
221,626 + GFF910 0.58 -1.0
221,626 + GFF910 0.58 -0.4
221,626 + GFF910 0.58 -0.2
221,627 - GFF910 0.58 -2.2
221,627 - GFF910 0.58 +2.5
221,920 + GFF910 0.75 -0.5
221,920 + GFF910 0.75 -1.2
222,523 + GFF911 0.19 -1.0
222,524 - GFF911 0.19 -0.2
222,524 - GFF911 0.19 +2.5
222,524 - GFF911 0.19 -0.9
222,524 - GFF911 0.19 -0.3
222,524 - GFF911 0.19 -1.0
222,589 + GFF911 0.29 -0.4
222,589 + GFF911 0.29 +0.1
222,629 - GFF911 0.35 +0.7
222,629 - GFF911 0.35 -0.1
222,740 - GFF911 0.53 +0.7
222,740 - GFF911 0.53 -0.0
222,740 - GFF911 0.53 -0.5
222,740 - GFF911 0.53 -0.5
222,740 - GFF911 0.53 +0.0
222,772 + GFF911 0.58 -0.8
222,772 + GFF911 0.58 -0.7
222,772 + GFF911 0.58 +0.3
222,772 + GFF911 0.58 -1.3
222,773 - GFF911 0.58 +1.0
222,773 - GFF911 0.58 +1.7
222,773 - GFF911 0.58 -0.2
223,027 + +0.5
223,027 + +1.0
223,027 + -0.2
223,027 + -0.4
223,028 - -0.4
223,028 - -0.4
223,042 + +1.1
223,042 + +0.3
223,042 + +0.1
223,042 + -0.1
223,042 + -0.5
223,043 - -0.5
223,043 - -0.3
223,043 - +1.0
223,043 - -0.3
223,043 - -1.3
223,043 - -0.2
223,078 + -0.1
223,079 - +0.2
223,091 + -0.3
223,091 + +0.3
223,092 - -0.8
223,351 - GFF912 0.29 -0.5

Or see this region's nucleotide sequence