Strain Fitness in Variovorax sp. SCN45 around GFF875

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF874 and GFF875 are separated by 174 nucleotidesGFF875 and GFF876 are separated by 104 nucleotides GFF874 - no description, at 183,148 to 184,188 GFF874 GFF875 - no description, at 184,363 to 184,743 GFF875 GFF876 - hypothetical protein, at 184,848 to 186,509 GFF876 Position (kb) 184 185Strain fitness (log2 ratio) -1 0 1at 183.673 kb on + strand, within GFF874at 183.674 kb on - strand, within GFF874at 183.674 kb on - strand, within GFF874at 183.850 kb on + strand, within GFF874at 183.850 kb on + strand, within GFF874at 183.851 kb on - strand, within GFF874at 183.851 kb on - strand, within GFF874at 183.917 kb on - strand, within GFF874at 184.439 kb on - strand, within GFF875at 184.439 kb on - strand, within GFF875at 184.439 kb on - strand, within GFF875at 184.525 kb on + strand, within GFF875at 184.526 kb on - strand, within GFF875at 184.741 kb on + strandat 184.927 kb on + strandat 185.075 kb on - strand, within GFF876at 185.075 kb on - strand, within GFF876at 185.185 kb on + strand, within GFF876at 185.185 kb on + strand, within GFF876at 185.185 kb on + strand, within GFF876at 185.185 kb on + strand, within GFF876at 185.185 kb on + strand, within GFF876at 185.185 kb on + strand, within GFF876at 185.186 kb on - strand, within GFF876at 185.186 kb on - strand, within GFF876at 185.186 kb on - strand, within GFF876at 185.186 kb on - strand, within GFF876at 185.186 kb on - strand, within GFF876at 185.488 kb on + strand, within GFF876at 185.488 kb on + strand, within GFF876at 185.489 kb on - strand, within GFF876at 185.491 kb on + strand, within GFF876at 185.491 kb on + strand, within GFF876at 185.491 kb on + strand, within GFF876at 185.491 kb on + strand, within GFF876at 185.492 kb on - strand, within GFF876at 185.492 kb on - strand, within GFF876at 185.492 kb on - strand, within GFF876at 185.492 kb on - strand, within GFF876at 185.680 kb on + strand, within GFF876at 185.681 kb on - strand, within GFF876

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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183,673 + GFF874 0.50 +0.2
183,674 - GFF874 0.51 +0.1
183,674 - GFF874 0.51 -0.0
183,850 + GFF874 0.67 -0.1
183,850 + GFF874 0.67 -0.8
183,851 - GFF874 0.68 -0.0
183,851 - GFF874 0.68 +0.2
183,917 - GFF874 0.74 +0.5
184,439 - GFF875 0.20 +0.3
184,439 - GFF875 0.20 +0.3
184,439 - GFF875 0.20 -0.2
184,525 + GFF875 0.43 +0.2
184,526 - GFF875 0.43 +0.0
184,741 + +0.5
184,927 + -1.1
185,075 - GFF876 0.14 +0.5
185,075 - GFF876 0.14 -0.6
185,185 + GFF876 0.20 +0.9
185,185 + GFF876 0.20 +0.0
185,185 + GFF876 0.20 -1.0
185,185 + GFF876 0.20 -0.5
185,185 + GFF876 0.20 +0.1
185,185 + GFF876 0.20 -0.5
185,186 - GFF876 0.20 -0.8
185,186 - GFF876 0.20 +0.1
185,186 - GFF876 0.20 -0.1
185,186 - GFF876 0.20 -0.5
185,186 - GFF876 0.20 -0.1
185,488 + GFF876 0.39 -0.5
185,488 + GFF876 0.39 +0.1
185,489 - GFF876 0.39 -0.5
185,491 + GFF876 0.39 -0.2
185,491 + GFF876 0.39 -0.1
185,491 + GFF876 0.39 +1.1
185,491 + GFF876 0.39 +0.9
185,492 - GFF876 0.39 -0.0
185,492 - GFF876 0.39 +0.5
185,492 - GFF876 0.39 +0.0
185,492 - GFF876 0.39 -0.3
185,680 + GFF876 0.50 +0.1
185,681 - GFF876 0.50 -1.1

Or see this region's nucleotide sequence