Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF867 and GFF868 are separated by 8 nucleotides GFF868 and GFF869 are separated by 153 nucleotides
GFF867 - Oxidoreductase, GMC family, at 174,599 to 176,224
GFF867
GFF868 - Uracil-DNA glycosylase, family 1, at 176,233 to 177,084
GFF868
GFF869 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 177,238 to 177,891
GFF869
Position (kb) 176
177
178 Strain fitness (log2 ratio) -1
0
1 at 175.290 kb on + strand, within GFF867 at 175.291 kb on - strand, within GFF867 at 175.317 kb on + strand, within GFF867 at 175.317 kb on + strand, within GFF867 at 175.317 kb on + strand, within GFF867 at 175.318 kb on - strand, within GFF867 at 175.869 kb on + strand, within GFF867 at 175.869 kb on + strand, within GFF867 at 175.870 kb on - strand, within GFF867 at 175.932 kb on + strand, within GFF867 at 175.932 kb on + strand, within GFF867 at 175.932 kb on + strand, within GFF867 at 175.932 kb on + strand, within GFF867 at 175.933 kb on - strand, within GFF867 at 175.986 kb on + strand, within GFF867 at 175.986 kb on + strand, within GFF867 at 176.199 kb on + strand at 176.199 kb on + strand at 176.200 kb on - strand at 176.200 kb on - strand at 176.200 kb on - strand at 176.200 kb on - strand at 176.808 kb on + strand, within GFF868 at 176.809 kb on - strand, within GFF868 at 177.136 kb on - strand at 177.139 kb on - strand at 177.418 kb on + strand, within GFF869 at 177.419 kb on - strand, within GFF869 at 177.421 kb on + strand, within GFF869 at 177.421 kb on + strand, within GFF869 at 177.421 kb on + strand, within GFF869 at 177.422 kb on - strand, within GFF869 at 177.422 kb on - strand, within GFF869 at 177.422 kb on - strand, within GFF869 at 177.424 kb on + strand, within GFF869 at 177.424 kb on + strand, within GFF869 at 177.424 kb on + strand, within GFF869 at 177.424 kb on + strand, within GFF869 at 177.425 kb on - strand, within GFF869 at 177.425 kb on - strand, within GFF869 at 177.449 kb on - strand, within GFF869 at 177.449 kb on - strand, within GFF869 at 177.449 kb on - strand, within GFF869 at 177.542 kb on - strand, within GFF869 at 177.767 kb on + strand, within GFF869 at 177.770 kb on - strand, within GFF869 at 177.770 kb on - strand, within GFF869 at 177.778 kb on + strand, within GFF869 at 177.922 kb on + strand at 177.925 kb on - strand at 177.955 kb on + strand at 178.010 kb on + strand at 178.010 kb on + strand at 178.011 kb on - strand at 178.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 175,290 + GFF867 0.42 -1.3 175,291 - GFF867 0.43 -0.5 175,317 + GFF867 0.44 +0.5 175,317 + GFF867 0.44 -0.7 175,317 + GFF867 0.44 +1.7 175,318 - GFF867 0.44 -0.3 175,869 + GFF867 0.78 +0.0 175,869 + GFF867 0.78 +0.2 175,870 - GFF867 0.78 +1.5 175,932 + GFF867 0.82 +1.2 175,932 + GFF867 0.82 +0.0 175,932 + GFF867 0.82 -1.1 175,932 + GFF867 0.82 +0.5 175,933 - GFF867 0.82 -0.3 175,986 + GFF867 0.85 -0.4 175,986 + GFF867 0.85 +0.9 176,199 + -0.4 176,199 + -1.0 176,200 - +0.0 176,200 - -0.5 176,200 - -0.0 176,200 - +0.5 176,808 + GFF868 0.67 -0.7 176,809 - GFF868 0.68 -0.8 177,136 - -1.1 177,139 - -0.8 177,418 + GFF869 0.28 +0.1 177,419 - GFF869 0.28 +0.5 177,421 + GFF869 0.28 -1.2 177,421 + GFF869 0.28 -0.6 177,421 + GFF869 0.28 -0.4 177,422 - GFF869 0.28 -0.6 177,422 - GFF869 0.28 +0.5 177,422 - GFF869 0.28 +0.1 177,424 + GFF869 0.28 -1.3 177,424 + GFF869 0.28 +0.4 177,424 + GFF869 0.28 -0.1 177,424 + GFF869 0.28 -1.3 177,425 - GFF869 0.29 -0.2 177,425 - GFF869 0.29 +0.7 177,449 - GFF869 0.32 -1.2 177,449 - GFF869 0.32 +0.2 177,449 - GFF869 0.32 -0.5 177,542 - GFF869 0.46 +0.6 177,767 + GFF869 0.81 -0.5 177,770 - GFF869 0.81 +0.5 177,770 - GFF869 0.81 -0.5 177,778 + GFF869 0.83 +0.1 177,922 + -0.4 177,925 - +0.2 177,955 + -0.2 178,010 + +0.5 178,010 + -1.3 178,011 - -0.4 178,026 - -0.5
Or see this region's nucleotide sequence