Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF857 and GFF858 are separated by 152 nucleotides GFF858 and GFF859 are separated by 16 nucleotides GFF859 and GFF860 are separated by 237 nucleotides
GFF857 - no description, at 164,118 to 164,975
GFF857
GFF858 - Copper tolerance protein, at 165,128 to 165,622
GFF858
GFF859 - Lactoylglutathione lyase (EC 4.4.1.5), at 165,639 to 166,031
GFF859
GFF860 - Cocaine esterase (EC 3.1.1.-), at 166,269 to 168,110
GFF860
Position (kb) 165
166
167 Strain fitness (log2 ratio) -1
0
1 at 164.717 kb on - strand, within GFF857 at 164.722 kb on + strand, within GFF857 at 165.014 kb on + strand at 165.015 kb on - strand at 165.572 kb on + strand, within GFF858 at 165.573 kb on - strand at 165.694 kb on + strand, within GFF859 at 165.922 kb on + strand, within GFF859 at 165.922 kb on + strand, within GFF859 at 165.923 kb on - strand, within GFF859 at 165.923 kb on - strand, within GFF859 at 166.019 kb on - strand at 166.019 kb on - strand at 166.172 kb on + strand at 166.173 kb on - strand at 166.422 kb on + strand at 166.422 kb on + strand at 166.455 kb on + strand, within GFF860 at 166.456 kb on - strand, within GFF860 at 166.566 kb on + strand, within GFF860 at 166.567 kb on - strand, within GFF860 at 166.716 kb on + strand, within GFF860
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 164,717 - GFF857 0.70 +0.8 164,722 + GFF857 0.70 +0.0 165,014 + +0.0 165,015 - -0.2 165,572 + GFF858 0.90 +1.3 165,573 - -0.0 165,694 + GFF859 0.14 -0.1 165,922 + GFF859 0.72 -0.3 165,922 + GFF859 0.72 -1.2 165,923 - GFF859 0.72 +0.5 165,923 - GFF859 0.72 -1.3 166,019 - +0.4 166,019 - +0.3 166,172 + -0.0 166,173 - -0.4 166,422 + -0.6 166,422 + +0.2 166,455 + GFF860 0.10 -0.4 166,456 - GFF860 0.10 -0.9 166,566 + GFF860 0.16 +0.0 166,567 - GFF860 0.16 -0.3 166,716 + GFF860 0.24 -0.6
Or see this region's nucleotide sequence