Strain Fitness in Variovorax sp. SCN45 around GFF818

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF816 and GFF817 overlap by 4 nucleotidesGFF817 and GFF818 are separated by 32 nucleotidesGFF818 and GFF819 are separated by 4 nucleotidesGFF819 and GFF820 overlap by 4 nucleotides GFF816 - L-carnitine dehydratase/bile acid-inducible protein F, at 121,303 to 122,484 GFF816 GFF817 - Similar to citrate lyase beta chain, 3, at 122,481 to 123,359 GFF817 GFF818 - BUG/TctC family periplasmic protein, at 123,392 to 124,402 GFF818 GFF819 - Uncharacterized protein CC_2099, at 124,407 to 124,952 GFF819 GFF820 - Intracellular protease, at 124,949 to 125,596 GFF820 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1 2 3at 123.366 kb on + strandat 123.366 kb on + strandat 123.366 kb on + strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.530 kb on + strand, within GFF818at 123.530 kb on + strand, within GFF818at 123.530 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.681 kb on - strand, within GFF818at 123.681 kb on - strand, within GFF818at 123.728 kb on + strand, within GFF818at 123.728 kb on + strand, within GFF818at 123.728 kb on + strand, within GFF818at 123.729 kb on - strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.744 kb on - strand, within GFF818at 123.744 kb on - strand, within GFF818at 123.767 kb on + strand, within GFF818at 123.767 kb on + strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.833 kb on + strand, within GFF818at 123.834 kb on - strand, within GFF818at 123.834 kb on - strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.968 kb on + strand, within GFF818at 123.969 kb on - strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.585 kb on + strand, within GFF819at 124.756 kb on + strand, within GFF819at 124.757 kb on - strand, within GFF819at 124.757 kb on - strand, within GFF819at 124.987 kb on - strandat 124.987 kb on - strandat 124.987 kb on - strandat 124.987 kb on - strandat 125.022 kb on + strand, within GFF820at 125.040 kb on + strand, within GFF820at 125.040 kb on + strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.041 kb on - strand, within GFF820at 125.043 kb on + strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.044 kb on - strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.394 kb on + strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.395 kb on - strand, within GFF820at 125.395 kb on - strand, within GFF820

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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123,366 + -1.0
123,366 + -0.5
123,366 + -0.5
123,367 - -0.2
123,367 - -0.5
123,367 - -0.3
123,367 - -0.2
123,367 - -0.5
123,367 - +0.0
123,367 - -0.1
123,378 + +0.5
123,378 + -1.2
123,378 + +0.6
123,378 + -0.6
123,378 + +0.2
123,378 + -0.6
123,378 + +1.5
123,378 + -0.8
123,379 - -0.5
123,379 - +0.6
123,379 - -0.2
123,379 - +0.2
123,379 - +0.7
123,379 - -0.4
123,379 - +1.5
123,379 - +0.4
123,379 - -0.2
123,379 - +0.4
123,379 - +0.3
123,379 - +0.4
123,379 - -0.1
123,379 - +0.6
123,530 + GFF818 0.14 +1.1
123,530 + GFF818 0.14 -0.8
123,530 + GFF818 0.14 -0.5
123,680 + GFF818 0.28 +3.1
123,680 + GFF818 0.28 +0.2
123,680 + GFF818 0.28 +1.1
123,680 + GFF818 0.28 +0.2
123,681 - GFF818 0.29 -0.5
123,681 - GFF818 0.29 -0.0
123,728 + GFF818 0.33 -0.1
123,728 + GFF818 0.33 -0.3
123,728 + GFF818 0.33 +0.6
123,729 - GFF818 0.33 +0.5
123,743 + GFF818 0.35 -0.3
123,743 + GFF818 0.35 +0.2
123,743 + GFF818 0.35 -0.6
123,743 + GFF818 0.35 +0.6
123,744 - GFF818 0.35 +0.0
123,744 - GFF818 0.35 +0.2
123,767 + GFF818 0.37 +0.9
123,767 + GFF818 0.37 -1.1
123,768 - GFF818 0.37 +1.2
123,768 - GFF818 0.37 +1.5
123,768 - GFF818 0.37 +0.1
123,768 - GFF818 0.37 +0.0
123,833 + GFF818 0.44 -0.0
123,834 - GFF818 0.44 -0.6
123,834 - GFF818 0.44 +0.6
123,851 + GFF818 0.45 +2.5
123,851 + GFF818 0.45 -0.6
123,851 + GFF818 0.45 +0.7
123,851 + GFF818 0.45 +0.5
123,852 - GFF818 0.45 +0.7
123,852 - GFF818 0.45 -0.1
123,852 - GFF818 0.45 -0.8
123,852 - GFF818 0.45 +0.4
123,852 - GFF818 0.45 -0.8
123,852 - GFF818 0.45 +0.6
123,852 - GFF818 0.45 -0.5
123,852 - GFF818 0.45 -1.3
123,852 - GFF818 0.45 -0.6
123,852 - GFF818 0.45 +0.5
123,968 + GFF818 0.57 -0.2
123,969 - GFF818 0.57 +0.1
124,184 + GFF818 0.78 -0.4
124,184 + GFF818 0.78 +0.1
124,184 + GFF818 0.78 -0.3
124,184 + GFF818 0.78 -0.5
124,184 + GFF818 0.78 +0.1
124,184 + GFF818 0.78 -0.5
124,184 + GFF818 0.78 -0.5
124,184 + GFF818 0.78 +3.1
124,184 + GFF818 0.78 -0.5
124,184 + GFF818 0.78 +0.5
124,184 + GFF818 0.78 -0.1
124,185 - GFF818 0.78 -0.6
124,185 - GFF818 0.78 -1.0
124,185 - GFF818 0.78 -0.3
124,185 - GFF818 0.78 +0.3
124,185 - GFF818 0.78 +1.5
124,185 - GFF818 0.78 +1.1
124,185 - GFF818 0.78 +0.2
124,185 - GFF818 0.78 -0.6
124,185 - GFF818 0.78 -0.5
124,185 - GFF818 0.78 -0.4
124,185 - GFF818 0.78 +0.8
124,185 - GFF818 0.78 -1.6
124,585 + GFF819 0.33 -0.0
124,756 + GFF819 0.64 -0.6
124,757 - GFF819 0.64 -1.3
124,757 - GFF819 0.64 -0.1
124,987 - -0.5
124,987 - -0.7
124,987 - +0.2
124,987 - -0.6
125,022 + GFF820 0.11 -1.3
125,040 + GFF820 0.14 -0.3
125,040 + GFF820 0.14 +0.4
125,041 - GFF820 0.14 -0.1
125,041 - GFF820 0.14 +0.5
125,041 - GFF820 0.14 -0.6
125,043 + GFF820 0.15 +0.1
125,044 - GFF820 0.15 -0.1
125,044 - GFF820 0.15 -1.1
125,044 - GFF820 0.15 +0.1
125,394 + GFF820 0.69 -0.1
125,394 + GFF820 0.69 -0.1
125,394 + GFF820 0.69 -0.3
125,394 + GFF820 0.69 -0.2
125,394 + GFF820 0.69 -0.3
125,394 + GFF820 0.69 -1.8
125,395 - GFF820 0.69 -0.2
125,395 - GFF820 0.69 -0.1
125,395 - GFF820 0.69 +0.0

Or see this region's nucleotide sequence