Strain Fitness in Variovorax sp. SCN45 around GFF804

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF802 and GFF803 are separated by 14 nucleotidesGFF803 and GFF804 are separated by 17 nucleotidesGFF804 and GFF805 are separated by 116 nucleotides GFF802 - Conserved uncharacterized protein CreA, at 107,629 to 108,117 GFF802 GFF803 - MutT/Nudix family protein, at 108,132 to 108,683 GFF803 GFF804 - Fumarylacetoacetate hydrolase family protein, at 108,701 to 109,402 GFF804 GFF805 - hypothetical protein, at 109,519 to 110,433 GFF805 Position (kb) 108 109 110Strain fitness (log2 ratio) -2 -1 0 1 2at 107.714 kb on + strand, within GFF802at 107.714 kb on + strand, within GFF802at 107.714 kb on + strand, within GFF802at 107.715 kb on - strand, within GFF802at 107.715 kb on - strand, within GFF802at 107.715 kb on - strand, within GFF802at 107.723 kb on + strand, within GFF802at 107.723 kb on + strand, within GFF802at 107.723 kb on + strand, within GFF802at 107.723 kb on + strand, within GFF802at 107.723 kb on + strand, within GFF802at 107.723 kb on + strand, within GFF802at 107.724 kb on - strand, within GFF802at 107.724 kb on - strand, within GFF802at 107.724 kb on - strand, within GFF802at 107.724 kb on - strand, within GFF802at 107.801 kb on + strand, within GFF802at 107.801 kb on + strand, within GFF802at 107.801 kb on + strand, within GFF802at 107.801 kb on + strand, within GFF802at 107.801 kb on + strand, within GFF802at 107.802 kb on - strand, within GFF802at 107.802 kb on - strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.936 kb on + strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.937 kb on - strand, within GFF802at 107.969 kb on + strand, within GFF802at 107.969 kb on + strand, within GFF802at 107.969 kb on + strand, within GFF802at 107.969 kb on + strand, within GFF802at 107.970 kb on - strand, within GFF802at 107.970 kb on - strand, within GFF802at 107.970 kb on - strand, within GFF802at 107.977 kb on + strand, within GFF802at 107.977 kb on + strand, within GFF802at 107.977 kb on + strand, within GFF802at 107.978 kb on - strand, within GFF802at 107.978 kb on - strand, within GFF802at 107.978 kb on - strand, within GFF802at 107.978 kb on - strand, within GFF802at 108.190 kb on + strand, within GFF803at 108.190 kb on + strand, within GFF803at 108.190 kb on + strand, within GFF803at 108.190 kb on + strand, within GFF803at 108.191 kb on - strand, within GFF803at 108.191 kb on - strand, within GFF803at 108.191 kb on - strand, within GFF803at 108.319 kb on + strand, within GFF803at 108.319 kb on + strand, within GFF803at 108.319 kb on + strand, within GFF803at 108.562 kb on + strand, within GFF803at 108.562 kb on + strand, within GFF803at 108.562 kb on + strand, within GFF803at 108.562 kb on + strand, within GFF803at 108.563 kb on - strand, within GFF803at 108.628 kb on + strandat 108.628 kb on + strandat 108.628 kb on + strandat 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.080 kb on + strand, within GFF804at 109.182 kb on + strand, within GFF804at 109.246 kb on - strand, within GFF804at 109.296 kb on + strand, within GFF804at 109.296 kb on + strand, within GFF804at 109.296 kb on + strand, within GFF804at 109.297 kb on - strand, within GFF804at 109.297 kb on - strand, within GFF804at 109.297 kb on - strand, within GFF804at 109.297 kb on - strand, within GFF804at 109.297 kb on - strand, within GFF804at 109.297 kb on - strand, within GFF804at 109.297 kb on - strand, within GFF804at 109.297 kb on - strand, within GFF804at 109.297 kb on - strand, within GFF804at 109.314 kb on + strand, within GFF804at 109.314 kb on + strand, within GFF804at 109.314 kb on + strand, within GFF804at 109.314 kb on + strand, within GFF804at 109.314 kb on + strand, within GFF804at 109.314 kb on + strand, within GFF804at 109.315 kb on - strand, within GFF804at 109.315 kb on - strand, within GFF804at 109.315 kb on - strand, within GFF804at 109.315 kb on - strand, within GFF804at 109.315 kb on - strand, within GFF804at 109.315 kb on - strand, within GFF804at 109.315 kb on - strand, within GFF804at 109.618 kb on + strand, within GFF805at 109.618 kb on + strand, within GFF805at 109.619 kb on - strand, within GFF805at 109.619 kb on - strand, within GFF805at 109.663 kb on + strand, within GFF805at 109.663 kb on + strand, within GFF805at 109.663 kb on + strand, within GFF805at 109.663 kb on + strand, within GFF805at 109.664 kb on - strand, within GFF805at 109.688 kb on - strand, within GFF805at 109.688 kb on - strand, within GFF805at 109.688 kb on - strand, within GFF805at 109.688 kb on - strand, within GFF805at 109.688 kb on - strand, within GFF805at 109.688 kb on - strand, within GFF805at 109.831 kb on + strand, within GFF805at 109.832 kb on - strand, within GFF805at 109.832 kb on - strand, within GFF805at 110.110 kb on + strand, within GFF805at 110.110 kb on + strand, within GFF805at 110.110 kb on + strand, within GFF805at 110.110 kb on + strand, within GFF805at 110.111 kb on - strand, within GFF805at 110.111 kb on - strand, within GFF805at 110.111 kb on - strand, within GFF805at 110.111 kb on - strand, within GFF805at 110.248 kb on + strand, within GFF805

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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107,714 + GFF802 0.17 +0.1
107,714 + GFF802 0.17 +0.9
107,714 + GFF802 0.17 -0.3
107,715 - GFF802 0.18 -0.2
107,715 - GFF802 0.18 -0.7
107,715 - GFF802 0.18 +0.5
107,723 + GFF802 0.19 -1.0
107,723 + GFF802 0.19 -0.1
107,723 + GFF802 0.19 -0.3
107,723 + GFF802 0.19 +0.4
107,723 + GFF802 0.19 +0.5
107,723 + GFF802 0.19 +0.5
107,724 - GFF802 0.19 -1.3
107,724 - GFF802 0.19 +0.4
107,724 - GFF802 0.19 -0.0
107,724 - GFF802 0.19 +0.2
107,801 + GFF802 0.35 -0.3
107,801 + GFF802 0.35 -0.3
107,801 + GFF802 0.35 +0.2
107,801 + GFF802 0.35 -0.7
107,801 + GFF802 0.35 -0.5
107,802 - GFF802 0.35 -0.1
107,802 - GFF802 0.35 -0.3
107,936 + GFF802 0.63 -0.1
107,936 + GFF802 0.63 -0.4
107,936 + GFF802 0.63 -0.6
107,936 + GFF802 0.63 +0.6
107,936 + GFF802 0.63 +0.9
107,936 + GFF802 0.63 -1.2
107,936 + GFF802 0.63 +0.5
107,936 + GFF802 0.63 -0.8
107,936 + GFF802 0.63 +1.0
107,936 + GFF802 0.63 -1.2
107,936 + GFF802 0.63 -0.8
107,936 + GFF802 0.63 -0.3
107,936 + GFF802 0.63 -0.4
107,936 + GFF802 0.63 +0.1
107,936 + GFF802 0.63 -2.4
107,937 - GFF802 0.63 -2.3
107,937 - GFF802 0.63 -0.0
107,937 - GFF802 0.63 -1.2
107,937 - GFF802 0.63 +0.2
107,937 - GFF802 0.63 -0.3
107,937 - GFF802 0.63 -1.0
107,937 - GFF802 0.63 +0.5
107,937 - GFF802 0.63 +0.2
107,937 - GFF802 0.63 -0.3
107,937 - GFF802 0.63 +0.2
107,937 - GFF802 0.63 +0.5
107,937 - GFF802 0.63 +0.5
107,937 - GFF802 0.63 -0.3
107,937 - GFF802 0.63 +0.9
107,937 - GFF802 0.63 -0.2
107,937 - GFF802 0.63 +0.6
107,937 - GFF802 0.63 +0.1
107,969 + GFF802 0.70 +1.7
107,969 + GFF802 0.70 -0.8
107,969 + GFF802 0.70 -0.1
107,969 + GFF802 0.70 +1.9
107,970 - GFF802 0.70 +0.1
107,970 - GFF802 0.70 -0.1
107,970 - GFF802 0.70 -0.1
107,977 + GFF802 0.71 -1.0
107,977 + GFF802 0.71 -0.1
107,977 + GFF802 0.71 +1.1
107,978 - GFF802 0.71 +0.1
107,978 - GFF802 0.71 +1.2
107,978 - GFF802 0.71 -1.1
107,978 - GFF802 0.71 -0.3
108,190 + GFF803 0.11 -1.4
108,190 + GFF803 0.11 -0.8
108,190 + GFF803 0.11 +0.9
108,190 + GFF803 0.11 -0.1
108,191 - GFF803 0.11 -0.4
108,191 - GFF803 0.11 +0.1
108,191 - GFF803 0.11 +0.2
108,319 + GFF803 0.34 +0.8
108,319 + GFF803 0.34 -0.3
108,319 + GFF803 0.34 -0.1
108,562 + GFF803 0.78 +0.0
108,562 + GFF803 0.78 -1.2
108,562 + GFF803 0.78 -1.1
108,562 + GFF803 0.78 -0.5
108,563 - GFF803 0.78 -0.4
108,628 + +0.1
108,628 + -0.3
108,628 + -0.4
109,080 + GFF804 0.54 -1.3
109,080 + GFF804 0.54 -0.7
109,080 + GFF804 0.54 +0.5
109,080 + GFF804 0.54 -0.5
109,080 + GFF804 0.54 +0.7
109,080 + GFF804 0.54 +0.6
109,080 + GFF804 0.54 -1.0
109,080 + GFF804 0.54 -0.3
109,080 + GFF804 0.54 -0.4
109,080 + GFF804 0.54 +0.6
109,080 + GFF804 0.54 -0.7
109,080 + GFF804 0.54 -0.4
109,080 + GFF804 0.54 -0.0
109,080 + GFF804 0.54 -0.2
109,182 + GFF804 0.69 +0.2
109,246 - GFF804 0.78 +1.2
109,296 + GFF804 0.85 +0.8
109,296 + GFF804 0.85 +1.3
109,296 + GFF804 0.85 +0.3
109,297 - GFF804 0.85 -0.3
109,297 - GFF804 0.85 -0.3
109,297 - GFF804 0.85 -1.3
109,297 - GFF804 0.85 +0.2
109,297 - GFF804 0.85 -0.4
109,297 - GFF804 0.85 +1.1
109,297 - GFF804 0.85 -0.5
109,297 - GFF804 0.85 -0.2
109,297 - GFF804 0.85 +0.5
109,314 + GFF804 0.87 -1.1
109,314 + GFF804 0.87 -0.0
109,314 + GFF804 0.87 +0.8
109,314 + GFF804 0.87 -0.3
109,314 + GFF804 0.87 +1.2
109,314 + GFF804 0.87 +0.2
109,315 - GFF804 0.87 -1.2
109,315 - GFF804 0.87 -0.3
109,315 - GFF804 0.87 -0.7
109,315 - GFF804 0.87 +0.0
109,315 - GFF804 0.87 +1.0
109,315 - GFF804 0.87 -0.6
109,315 - GFF804 0.87 +0.9
109,618 + GFF805 0.11 -1.1
109,618 + GFF805 0.11 +0.3
109,619 - GFF805 0.11 -0.0
109,619 - GFF805 0.11 -0.2
109,663 + GFF805 0.16 -0.3
109,663 + GFF805 0.16 -0.2
109,663 + GFF805 0.16 -0.3
109,663 + GFF805 0.16 -0.5
109,664 - GFF805 0.16 -1.7
109,688 - GFF805 0.18 -0.6
109,688 - GFF805 0.18 -0.3
109,688 - GFF805 0.18 -0.1
109,688 - GFF805 0.18 -0.7
109,688 - GFF805 0.18 -0.3
109,688 - GFF805 0.18 +0.5
109,831 + GFF805 0.34 -1.5
109,832 - GFF805 0.34 -0.7
109,832 - GFF805 0.34 -0.3
110,110 + GFF805 0.65 -0.1
110,110 + GFF805 0.65 +1.5
110,110 + GFF805 0.65 +0.2
110,110 + GFF805 0.65 -0.3
110,111 - GFF805 0.65 +0.5
110,111 - GFF805 0.65 -1.0
110,111 - GFF805 0.65 -0.5
110,111 - GFF805 0.65 +0.5
110,248 + GFF805 0.80 -0.7

Or see this region's nucleotide sequence