Strain Fitness in Variovorax sp. SCN45 around GFF794

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF793 and GFF794 are separated by 16 nucleotidesGFF794 and GFF795 are separated by 49 nucleotides GFF793 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 85,643 to 98,458 GFF793 GFF794 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 98,475 to 99,029 GFF794 GFF795 - 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase (EC 2.1.1.14), at 99,079 to 101,370 GFF795 Position (kb) 98 99 100Strain fitness (log2 ratio) -2 -1 0 1at 97.493 kb on + strandat 97.493 kb on + strandat 97.494 kb on - strandat 97.526 kb on + strandat 97.526 kb on + strandat 97.526 kb on + strandat 97.527 kb on - strandat 97.527 kb on - strandat 97.527 kb on - strandat 97.527 kb on - strandat 97.574 kb on + strandat 97.574 kb on + strandat 97.574 kb on + strandat 97.575 kb on - strandat 97.575 kb on - strandat 97.575 kb on - strandat 97.575 kb on - strandat 97.575 kb on - strandat 97.575 kb on - strandat 97.875 kb on - strandat 97.875 kb on - strandat 97.895 kb on + strandat 97.895 kb on + strandat 97.895 kb on + strandat 97.895 kb on + strandat 97.895 kb on + strandat 97.896 kb on - strandat 97.896 kb on - strandat 97.896 kb on - strandat 97.896 kb on - strandat 98.351 kb on + strandat 98.351 kb on + strandat 98.352 kb on + strandat 98.352 kb on - strandat 98.352 kb on - strandat 98.352 kb on - strandat 98.352 kb on - strandat 98.352 kb on - strandat 98.352 kb on - strandat 98.456 kb on + strandat 98.457 kb on - strandat 98.457 kb on - strandat 98.457 kb on - strandat 98.457 kb on - strandat 98.457 kb on - strandat 98.457 kb on - strandat 98.565 kb on + strand, within GFF794at 98.565 kb on + strand, within GFF794at 98.565 kb on + strand, within GFF794at 98.566 kb on - strand, within GFF794at 98.566 kb on - strand, within GFF794at 98.566 kb on - strand, within GFF794at 98.566 kb on - strand, within GFF794at 98.566 kb on - strand, within GFF794at 98.667 kb on - strand, within GFF794at 98.694 kb on + strand, within GFF794at 98.694 kb on + strand, within GFF794at 98.694 kb on + strand, within GFF794at 98.694 kb on + strand, within GFF794at 98.694 kb on + strand, within GFF794at 98.694 kb on + strand, within GFF794at 98.694 kb on + strand, within GFF794at 98.694 kb on + strand, within GFF794at 98.694 kb on + strand, within GFF794at 98.694 kb on + strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.695 kb on - strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.696 kb on + strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.697 kb on - strand, within GFF794at 98.699 kb on - strand, within GFF794at 98.700 kb on + strand, within GFF794at 98.700 kb on + strand, within GFF794at 98.700 kb on + strand, within GFF794at 98.700 kb on + strand, within GFF794at 98.700 kb on + strand, within GFF794at 98.700 kb on + strand, within GFF794at 98.700 kb on + strand, within GFF794at 98.700 kb on + strand, within GFF794at 98.701 kb on - strand, within GFF794at 98.701 kb on - strand, within GFF794at 98.701 kb on - strand, within GFF794at 98.701 kb on - strand, within GFF794at 98.701 kb on - strand, within GFF794at 98.701 kb on - strand, within GFF794at 98.757 kb on + strand, within GFF794at 98.758 kb on - strand, within GFF794at 99.272 kb on + strandat 99.272 kb on + strandat 99.272 kb on + strandat 99.272 kb on + strandat 99.272 kb on + strandat 99.273 kb on - strandat 99.273 kb on - strandat 99.273 kb on - strandat 99.299 kb on + strandat 99.300 kb on - strandat 99.300 kb on - strandat 99.413 kb on + strand, within GFF795at 99.414 kb on - strand, within GFF795at 99.494 kb on + strand, within GFF795at 99.494 kb on + strand, within GFF795at 99.494 kb on + strand, within GFF795at 99.495 kb on - strand, within GFF795at 99.495 kb on - strand, within GFF795at 99.495 kb on - strand, within GFF795at 99.495 kb on - strand, within GFF795at 99.693 kb on + strand, within GFF795at 99.693 kb on + strand, within GFF795at 99.693 kb on + strand, within GFF795at 99.693 kb on + strand, within GFF795at 99.693 kb on + strand, within GFF795at 99.694 kb on - strand, within GFF795at 99.694 kb on - strand, within GFF795at 99.694 kb on - strand, within GFF795at 99.694 kb on - strand, within GFF795at 99.728 kb on + strand, within GFF795at 99.728 kb on + strand, within GFF795at 99.728 kb on + strand, within GFF795at 99.729 kb on - strand, within GFF795at 99.729 kb on - strand, within GFF795at 99.809 kb on + strand, within GFF795at 99.842 kb on + strand, within GFF795at 99.842 kb on + strand, within GFF795at 99.843 kb on - strand, within GFF795at 99.866 kb on + strand, within GFF795at 99.866 kb on + strand, within GFF795at 99.867 kb on - strand, within GFF795at 99.974 kb on + strand, within GFF795at 99.974 kb on + strand, within GFF795at 99.975 kb on - strand, within GFF795at 100.004 kb on + strand, within GFF795at 100.004 kb on + strand, within GFF795at 100.004 kb on + strand, within GFF795at 100.004 kb on + strand, within GFF795at 100.004 kb on + strand, within GFF795at 100.004 kb on + strand, within GFF795at 100.005 kb on - strand, within GFF795at 100.005 kb on - strand, within GFF795at 100.005 kb on - strand, within GFF795

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
97,493 + -1.8
97,493 + +0.2
97,494 - -0.7
97,526 + +1.5
97,526 + -0.3
97,526 + -0.5
97,527 - -0.4
97,527 - -0.2
97,527 - -0.0
97,527 - -0.3
97,574 + +0.0
97,574 + -0.5
97,574 + -1.3
97,575 - +0.8
97,575 - +0.4
97,575 - -0.3
97,575 - -0.2
97,575 - +1.3
97,575 - +0.9
97,875 - -0.2
97,875 - -0.3
97,895 + -1.8
97,895 + +0.3
97,895 + +0.6
97,895 + -0.9
97,895 + -0.4
97,896 - +0.2
97,896 - -0.2
97,896 - -0.2
97,896 - +0.7
98,351 + -0.1
98,351 + -0.6
98,352 + -1.1
98,352 - -0.3
98,352 - +0.8
98,352 - +0.2
98,352 - +0.6
98,352 - -0.7
98,352 - +1.1
98,456 + -0.5
98,457 - -0.2
98,457 - +0.7
98,457 - -0.9
98,457 - -0.9
98,457 - +0.3
98,457 - +0.0
98,565 + GFF794 0.16 -0.4
98,565 + GFF794 0.16 -1.1
98,565 + GFF794 0.16 +0.9
98,566 - GFF794 0.16 +0.5
98,566 - GFF794 0.16 -0.2
98,566 - GFF794 0.16 -1.4
98,566 - GFF794 0.16 -0.4
98,566 - GFF794 0.16 -0.5
98,667 - GFF794 0.35 -0.4
98,694 + GFF794 0.39 +0.6
98,694 + GFF794 0.39 +1.5
98,694 + GFF794 0.39 -1.1
98,694 + GFF794 0.39 -0.1
98,694 + GFF794 0.39 -0.1
98,694 + GFF794 0.39 -0.8
98,694 + GFF794 0.39 +0.1
98,694 + GFF794 0.39 -1.3
98,694 + GFF794 0.39 +1.2
98,694 + GFF794 0.39 +0.0
98,695 - GFF794 0.40 +0.4
98,695 - GFF794 0.40 -2.3
98,695 - GFF794 0.40 +0.4
98,695 - GFF794 0.40 -0.5
98,695 - GFF794 0.40 +0.3
98,695 - GFF794 0.40 +1.1
98,695 - GFF794 0.40 -0.4
98,695 - GFF794 0.40 -0.1
98,695 - GFF794 0.40 -0.8
98,695 - GFF794 0.40 -2.2
98,695 - GFF794 0.40 -0.1
98,695 - GFF794 0.40 -0.3
98,696 + GFF794 0.40 -0.4
98,696 + GFF794 0.40 -0.2
98,696 + GFF794 0.40 -0.4
98,696 + GFF794 0.40 -0.7
98,696 + GFF794 0.40 +0.2
98,696 + GFF794 0.40 +0.8
98,696 + GFF794 0.40 +0.2
98,696 + GFF794 0.40 -0.1
98,696 + GFF794 0.40 +0.4
98,696 + GFF794 0.40 +0.9
98,696 + GFF794 0.40 +0.5
98,696 + GFF794 0.40 -0.1
98,696 + GFF794 0.40 +0.2
98,696 + GFF794 0.40 +0.5
98,697 - GFF794 0.40 -0.2
98,697 - GFF794 0.40 -1.5
98,697 - GFF794 0.40 -0.6
98,697 - GFF794 0.40 -0.5
98,697 - GFF794 0.40 -1.0
98,697 - GFF794 0.40 -0.3
98,697 - GFF794 0.40 +0.2
98,697 - GFF794 0.40 -0.3
98,697 - GFF794 0.40 +0.8
98,697 - GFF794 0.40 +0.8
98,697 - GFF794 0.40 +1.0
98,697 - GFF794 0.40 -0.1
98,697 - GFF794 0.40 -1.1
98,697 - GFF794 0.40 -2.1
98,697 - GFF794 0.40 +1.3
98,699 - GFF794 0.40 -0.1
98,700 + GFF794 0.41 -0.5
98,700 + GFF794 0.41 -0.5
98,700 + GFF794 0.41 +0.7
98,700 + GFF794 0.41 +0.4
98,700 + GFF794 0.41 +0.5
98,700 + GFF794 0.41 +0.5
98,700 + GFF794 0.41 +0.5
98,700 + GFF794 0.41 -0.1
98,701 - GFF794 0.41 -0.5
98,701 - GFF794 0.41 -1.0
98,701 - GFF794 0.41 +0.4
98,701 - GFF794 0.41 -0.7
98,701 - GFF794 0.41 -0.2
98,701 - GFF794 0.41 -0.8
98,757 + GFF794 0.51 +0.1
98,758 - GFF794 0.51 +0.4
99,272 + -0.2
99,272 + +1.2
99,272 + -0.1
99,272 + +0.3
99,272 + +0.7
99,273 - +0.3
99,273 - +0.2
99,273 - -0.5
99,299 + -0.8
99,300 - -0.6
99,300 - -0.6
99,413 + GFF795 0.15 -0.3
99,414 - GFF795 0.15 -0.6
99,494 + GFF795 0.18 -1.7
99,494 + GFF795 0.18 -0.2
99,494 + GFF795 0.18 +0.1
99,495 - GFF795 0.18 +0.4
99,495 - GFF795 0.18 -0.3
99,495 - GFF795 0.18 -0.5
99,495 - GFF795 0.18 -1.3
99,693 + GFF795 0.27 -0.1
99,693 + GFF795 0.27 -0.2
99,693 + GFF795 0.27 +0.3
99,693 + GFF795 0.27 +0.5
99,693 + GFF795 0.27 +0.9
99,694 - GFF795 0.27 -0.9
99,694 - GFF795 0.27 -0.3
99,694 - GFF795 0.27 +0.3
99,694 - GFF795 0.27 +0.2
99,728 + GFF795 0.28 +0.7
99,728 + GFF795 0.28 -0.4
99,728 + GFF795 0.28 -1.1
99,729 - GFF795 0.28 -0.3
99,729 - GFF795 0.28 +1.2
99,809 + GFF795 0.32 -0.3
99,842 + GFF795 0.33 -0.6
99,842 + GFF795 0.33 -0.7
99,843 - GFF795 0.33 +0.3
99,866 + GFF795 0.34 +0.5
99,866 + GFF795 0.34 +0.7
99,867 - GFF795 0.34 +0.5
99,974 + GFF795 0.39 +0.5
99,974 + GFF795 0.39 +0.6
99,975 - GFF795 0.39 -0.9
100,004 + GFF795 0.40 -1.0
100,004 + GFF795 0.40 -0.3
100,004 + GFF795 0.40 +0.2
100,004 + GFF795 0.40 -0.1
100,004 + GFF795 0.40 +0.4
100,004 + GFF795 0.40 -0.2
100,005 - GFF795 0.40 +0.1
100,005 - GFF795 0.40 +0.2
100,005 - GFF795 0.40 +0.1

Or see this region's nucleotide sequence