Strain Fitness in Variovorax sp. SCN45 around GFF765

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF764 and GFF765 are separated by 211 nucleotidesGFF765 and GFF766 are separated by 184 nucleotides GFF764 - hypothetical protein, at 28,152 to 29,831 GFF764 GFF765 - hypothetical protein, at 30,043 to 30,309 GFF765 GFF766 - 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18), at 30,494 to 32,404 GFF766 Position (kb) 30 31Strain fitness (log2 ratio) -2 -1 0 1 2 3at 29.069 kb on - strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.186 kb on - strand, within GFF764at 29.186 kb on - strand, within GFF764at 29.186 kb on - strand, within GFF764at 29.186 kb on - strand, within GFF764at 29.186 kb on - strand, within GFF764at 29.533 kb on + strand, within GFF764at 29.533 kb on + strand, within GFF764at 29.533 kb on + strand, within GFF764at 29.533 kb on + strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.536 kb on + strand, within GFF764at 29.537 kb on - strand, within GFF764at 29.537 kb on - strand, within GFF764at 29.551 kb on + strand, within GFF764at 29.635 kb on + strand, within GFF764at 29.897 kb on - strandat 29.949 kb on - strandat 30.042 kb on + strandat 30.061 kb on + strandat 30.061 kb on + strandat 30.061 kb on + strandat 30.061 kb on + strandat 30.061 kb on + strandat 30.061 kb on + strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.097 kb on + strand, within GFF765at 30.098 kb on - strand, within GFF765at 30.224 kb on + strand, within GFF765at 30.247 kb on + strand, within GFF765at 30.539 kb on + strandat 30.572 kb on + strandat 30.573 kb on - strandat 30.625 kb on - strandat 30.671 kb on + strandat 30.671 kb on + strandat 30.671 kb on + strandat 30.672 kb on - strandat 30.672 kb on - strandat 30.738 kb on + strand, within GFF766at 30.738 kb on + strand, within GFF766at 30.764 kb on + strand, within GFF766at 30.765 kb on - strand, within GFF766at 30.765 kb on - strand, within GFF766at 30.765 kb on - strand, within GFF766at 30.765 kb on - strand, within GFF766at 30.770 kb on + strand, within GFF766at 30.770 kb on + strand, within GFF766at 30.879 kb on - strand, within GFF766at 30.950 kb on + strand, within GFF766at 31.031 kb on + strand, within GFF766at 31.032 kb on - strand, within GFF766at 31.122 kb on - strand, within GFF766at 31.122 kb on - strand, within GFF766at 31.166 kb on + strand, within GFF766at 31.166 kb on + strand, within GFF766at 31.166 kb on + strand, within GFF766at 31.167 kb on - strand, within GFF766at 31.167 kb on - strand, within GFF766at 31.167 kb on - strand, within GFF766at 31.277 kb on + strand, within GFF766at 31.278 kb on - strand, within GFF766at 31.278 kb on - strand, within GFF766at 31.278 kb on - strand, within GFF766at 31.278 kb on - strand, within GFF766

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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29,069 - GFF764 0.55 -0.4
29,185 + GFF764 0.61 +0.0
29,185 + GFF764 0.61 -1.2
29,185 + GFF764 0.61 -0.8
29,185 + GFF764 0.61 -0.6
29,185 + GFF764 0.61 +0.6
29,185 + GFF764 0.61 -0.0
29,185 + GFF764 0.61 -0.5
29,186 - GFF764 0.62 -0.9
29,186 - GFF764 0.62 +0.3
29,186 - GFF764 0.62 -0.5
29,186 - GFF764 0.62 -0.1
29,186 - GFF764 0.62 -0.5
29,533 + GFF764 0.82 -0.1
29,533 + GFF764 0.82 -0.8
29,533 + GFF764 0.82 -0.6
29,533 + GFF764 0.82 -0.3
29,534 - GFF764 0.82 +0.4
29,534 - GFF764 0.82 +0.5
29,534 - GFF764 0.82 +3.3
29,534 - GFF764 0.82 -0.6
29,534 - GFF764 0.82 -0.1
29,534 - GFF764 0.82 -1.0
29,536 + GFF764 0.82 -0.3
29,537 - GFF764 0.82 -0.6
29,537 - GFF764 0.82 -0.2
29,551 + GFF764 0.83 +0.7
29,635 + GFF764 0.88 +1.1
29,897 - -0.0
29,949 - -0.7
30,042 + -0.1
30,061 + -0.8
30,061 + -0.7
30,061 + +0.5
30,061 + -0.7
30,061 + -0.6
30,061 + +0.4
30,062 - -0.3
30,062 - +0.2
30,062 - +0.2
30,062 - +0.1
30,062 - +0.1
30,062 - +0.1
30,062 - +0.2
30,097 + GFF765 0.20 -0.3
30,098 - GFF765 0.21 -0.3
30,224 + GFF765 0.68 -0.9
30,247 + GFF765 0.76 -0.8
30,539 + -0.1
30,572 + +0.5
30,573 - -0.4
30,625 - -0.6
30,671 + -1.7
30,671 + +0.2
30,671 + -0.0
30,672 - -0.8
30,672 - -0.4
30,738 + GFF766 0.13 -0.8
30,738 + GFF766 0.13 -0.4
30,764 + GFF766 0.14 +1.1
30,765 - GFF766 0.14 +1.5
30,765 - GFF766 0.14 +0.0
30,765 - GFF766 0.14 +0.5
30,765 - GFF766 0.14 -0.5
30,770 + GFF766 0.14 +0.3
30,770 + GFF766 0.14 +1.3
30,879 - GFF766 0.20 +2.1
30,950 + GFF766 0.24 -0.8
31,031 + GFF766 0.28 +0.2
31,032 - GFF766 0.28 -0.0
31,122 - GFF766 0.33 -0.8
31,122 - GFF766 0.33 +0.4
31,166 + GFF766 0.35 -1.5
31,166 + GFF766 0.35 -2.3
31,166 + GFF766 0.35 -0.2
31,167 - GFF766 0.35 +0.6
31,167 - GFF766 0.35 -0.2
31,167 - GFF766 0.35 -0.4
31,277 + GFF766 0.41 -2.0
31,278 - GFF766 0.41 +0.1
31,278 - GFF766 0.41 +0.1
31,278 - GFF766 0.41 +0.1
31,278 - GFF766 0.41 -0.8

Or see this region's nucleotide sequence