Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7385 and GFF7386 overlap by 4 nucleotides GFF7386 and GFF7387 are separated by 33 nucleotides GFF7387 and GFF7388 are separated by 6 nucleotides
GFF7385 - hypothetical protein, at 3,093 to 4,460
GFF7385
GFF7386 - no description, at 4,457 to 5,329
GFF7386
GFF7387 - no description, at 5,363 to 5,500
GFF7387
GFF7388 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 5,507 to 6,259
GFF7388
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1 at 3.498 kb on + strand, within GFF7385 at 3.498 kb on + strand, within GFF7385 at 3.499 kb on - strand, within GFF7385 at 3.538 kb on - strand, within GFF7385 at 3.610 kb on - strand, within GFF7385 at 3.879 kb on - strand, within GFF7385 at 3.885 kb on - strand, within GFF7385 at 3.891 kb on + strand, within GFF7385 at 3.892 kb on - strand, within GFF7385 at 4.667 kb on + strand, within GFF7386 at 4.667 kb on + strand, within GFF7386 at 4.667 kb on + strand, within GFF7386 at 4.717 kb on - strand, within GFF7386 at 4.889 kb on + strand, within GFF7386 at 4.944 kb on - strand, within GFF7386 at 4.944 kb on - strand, within GFF7386 at 5.156 kb on + strand, within GFF7386 at 5.156 kb on + strand, within GFF7386 at 5.157 kb on - strand, within GFF7386 at 5.476 kb on + strand, within GFF7387 at 5.498 kb on + strand at 5.498 kb on + strand at 5.499 kb on - strand at 5.712 kb on + strand, within GFF7388 at 5.712 kb on + strand, within GFF7388 at 5.822 kb on + strand, within GFF7388 at 5.888 kb on - strand, within GFF7388 at 5.960 kb on + strand, within GFF7388 at 6.061 kb on - strand, within GFF7388
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 3,498 + GFF7385 0.30 +0.8 3,498 + GFF7385 0.30 +0.2 3,499 - GFF7385 0.30 +0.1 3,538 - GFF7385 0.33 +0.1 3,610 - GFF7385 0.38 +0.4 3,879 - GFF7385 0.57 +1.4 3,885 - GFF7385 0.58 +1.3 3,891 + GFF7385 0.58 -0.5 3,892 - GFF7385 0.58 +0.2 4,667 + GFF7386 0.24 +0.6 4,667 + GFF7386 0.24 -1.0 4,667 + GFF7386 0.24 -0.3 4,717 - GFF7386 0.30 -0.6 4,889 + GFF7386 0.49 -2.0 4,944 - GFF7386 0.56 -0.6 4,944 - GFF7386 0.56 -1.2 5,156 + GFF7386 0.80 -0.2 5,156 + GFF7386 0.80 -0.1 5,157 - GFF7386 0.80 -0.1 5,476 + GFF7387 0.82 -0.2 5,498 + +1.1 5,498 + -0.1 5,499 - -0.0 5,712 + GFF7388 0.27 -1.9 5,712 + GFF7388 0.27 +0.0 5,822 + GFF7388 0.42 +0.1 5,888 - GFF7388 0.51 -0.0 5,960 + GFF7388 0.60 -0.6 6,061 - GFF7388 0.74 +0.1
Or see this region's nucleotide sequence