Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7356 and GFF7357 overlap by 4 nucleotides GFF7357 and GFF7358 overlap by 17 nucleotides GFF7358 and GFF7359 overlap by 8 nucleotides GFF7359 and GFF7360 are separated by 31 nucleotides
GFF7356 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 4,426 to 5,151
GFF7356
GFF7357 - Phenylacetate ABC transporter, ATP-binding protein 1, at 5,148 to 5,912
GFF7357
GFF7358 - Phenylacetate ABC transporter, permease protein 2, at 5,896 to 6,864
GFF7358
GFF7359 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 6,857 to 7,729
GFF7359
GFF7360 - Urea ABC transporter, substrate-binding protein UrtA, at 7,761 to 8,900
GFF7360
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.074 kb on + strand, within GFF7356 at 5.102 kb on + strand at 5.167 kb on + strand at 5.167 kb on + strand at 5.168 kb on - strand at 5.449 kb on + strand, within GFF7357 at 5.450 kb on - strand, within GFF7357 at 5.753 kb on - strand, within GFF7357 at 6.014 kb on + strand, within GFF7358 at 6.014 kb on + strand, within GFF7358 at 6.015 kb on - strand, within GFF7358 at 6.015 kb on - strand, within GFF7358 at 6.203 kb on + strand, within GFF7358 at 6.204 kb on - strand, within GFF7358 at 6.204 kb on - strand, within GFF7358 at 6.518 kb on + strand, within GFF7358 at 6.519 kb on - strand, within GFF7358 at 6.644 kb on + strand, within GFF7358 at 6.695 kb on + strand, within GFF7358 at 6.712 kb on - strand, within GFF7358 at 6.734 kb on + strand, within GFF7358 at 6.735 kb on - strand, within GFF7358 at 6.742 kb on + strand, within GFF7358 at 6.742 kb on + strand, within GFF7358 at 6.743 kb on - strand, within GFF7358 at 6.949 kb on - strand, within GFF7359 at 6.949 kb on - strand, within GFF7359 at 6.949 kb on - strand, within GFF7359 at 6.961 kb on + strand, within GFF7359 at 6.961 kb on + strand, within GFF7359 at 6.962 kb on - strand, within GFF7359 at 6.962 kb on - strand, within GFF7359 at 6.962 kb on - strand, within GFF7359 at 6.962 kb on - strand, within GFF7359 at 6.962 kb on - strand, within GFF7359 at 6.963 kb on + strand, within GFF7359 at 6.964 kb on - strand, within GFF7359 at 7.089 kb on + strand, within GFF7359 at 7.089 kb on + strand, within GFF7359 at 7.274 kb on + strand, within GFF7359 at 7.274 kb on + strand, within GFF7359 at 7.274 kb on + strand, within GFF7359 at 7.275 kb on - strand, within GFF7359 at 7.275 kb on - strand, within GFF7359 at 7.275 kb on - strand, within GFF7359 at 7.275 kb on - strand, within GFF7359 at 7.291 kb on + strand, within GFF7359 at 7.292 kb on - strand, within GFF7359 at 7.415 kb on + strand, within GFF7359 at 7.502 kb on + strand, within GFF7359 at 7.502 kb on + strand, within GFF7359 at 7.595 kb on + strand, within GFF7359 at 7.595 kb on + strand, within GFF7359 at 7.596 kb on - strand, within GFF7359 at 7.644 kb on + strand at 7.644 kb on + strand at 7.644 kb on + strand at 7.644 kb on + strand at 7.644 kb on + strand at 7.645 kb on - strand at 7.645 kb on - strand at 7.677 kb on + strand at 7.677 kb on + strand at 7.762 kb on + strand at 7.762 kb on + strand at 7.763 kb on - strand at 7.763 kb on - strand at 7.804 kb on + strand at 7.805 kb on - strand at 7.852 kb on + strand at 7.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 5,074 + GFF7356 0.89 +0.6 5,102 + +0.9 5,167 + +0.2 5,167 + -1.3 5,168 - -0.5 5,449 + GFF7357 0.39 +1.0 5,450 - GFF7357 0.39 +0.3 5,753 - GFF7357 0.79 -0.6 6,014 + GFF7358 0.12 -0.3 6,014 + GFF7358 0.12 +0.9 6,015 - GFF7358 0.12 +0.7 6,015 - GFF7358 0.12 +1.9 6,203 + GFF7358 0.32 +0.9 6,204 - GFF7358 0.32 -0.6 6,204 - GFF7358 0.32 +0.1 6,518 + GFF7358 0.64 +0.3 6,519 - GFF7358 0.64 +0.3 6,644 + GFF7358 0.77 +0.4 6,695 + GFF7358 0.82 +1.1 6,712 - GFF7358 0.84 +0.7 6,734 + GFF7358 0.86 -1.0 6,735 - GFF7358 0.87 -0.1 6,742 + GFF7358 0.87 -0.2 6,742 + GFF7358 0.87 +0.0 6,743 - GFF7358 0.87 -1.3 6,949 - GFF7359 0.11 -0.6 6,949 - GFF7359 0.11 +0.3 6,949 - GFF7359 0.11 -0.2 6,961 + GFF7359 0.12 -0.6 6,961 + GFF7359 0.12 -2.5 6,962 - GFF7359 0.12 +0.4 6,962 - GFF7359 0.12 -0.4 6,962 - GFF7359 0.12 +0.1 6,962 - GFF7359 0.12 -0.2 6,962 - GFF7359 0.12 +0.1 6,963 + GFF7359 0.12 +1.2 6,964 - GFF7359 0.12 -0.1 7,089 + GFF7359 0.27 -0.6 7,089 + GFF7359 0.27 -1.6 7,274 + GFF7359 0.48 -1.0 7,274 + GFF7359 0.48 -0.8 7,274 + GFF7359 0.48 -0.3 7,275 - GFF7359 0.48 -0.8 7,275 - GFF7359 0.48 +0.3 7,275 - GFF7359 0.48 -0.6 7,275 - GFF7359 0.48 +0.1 7,291 + GFF7359 0.50 -1.3 7,292 - GFF7359 0.50 +0.0 7,415 + GFF7359 0.64 +0.2 7,502 + GFF7359 0.74 +0.2 7,502 + GFF7359 0.74 -0.4 7,595 + GFF7359 0.85 -0.5 7,595 + GFF7359 0.85 -0.4 7,596 - GFF7359 0.85 -0.7 7,644 + -0.4 7,644 + +0.1 7,644 + +0.3 7,644 + -0.2 7,644 + -0.5 7,645 - +0.3 7,645 - -1.2 7,677 + -0.1 7,677 + -0.5 7,762 + -0.1 7,762 + -0.7 7,763 - +0.3 7,763 - +0.9 7,804 + -0.1 7,805 - +0.4 7,852 + -0.5 7,853 - +0.2
Or see this region's nucleotide sequence