Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7286 and GFF7287 overlap by 4 nucleotides GFF7287 and GFF7288 are separated by 36 nucleotides
GFF7286 - Dipeptide ABC transporter, ATP-binding protein DppD (TC 3.A.1.5.2), at 4,003 to 5,031
GFF7286
GFF7287 - Dipeptide ABC transporter, ATP-binding protein DppF (TC 3.A.1.5.2), at 5,028 to 6,062
GFF7287
GFF7288 - Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2), at 6,099 to 7,730
GFF7288
Position (kb) 5
6
7 Strain fitness (log2 ratio) -1
0
1
2
3 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.685 kb on - strand, within GFF7286 at 4.685 kb on - strand, within GFF7286 at 4.747 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 5.082 kb on + strand at 5.082 kb on + strand at 5.082 kb on + strand at 5.082 kb on + strand at 5.083 kb on - strand at 5.083 kb on - strand at 5.282 kb on + strand, within GFF7287 at 5.283 kb on - strand, within GFF7287 at 5.478 kb on + strand, within GFF7287 at 5.661 kb on + strand, within GFF7287 at 5.724 kb on + strand, within GFF7287 at 5.724 kb on + strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.787 kb on + strand, within GFF7287 at 5.787 kb on + strand, within GFF7287 at 5.979 kb on + strand at 5.979 kb on + strand at 6.060 kb on + strand at 6.061 kb on - strand at 6.213 kb on + strand at 6.214 kb on - strand at 6.244 kb on - strand at 6.294 kb on + strand, within GFF7288 at 6.294 kb on + strand, within GFF7288 at 6.295 kb on - strand, within GFF7288 at 6.295 kb on - strand, within GFF7288 at 6.295 kb on - strand, within GFF7288 at 6.295 kb on - strand, within GFF7288 at 6.295 kb on - strand, within GFF7288 at 6.384 kb on + strand, within GFF7288 at 6.384 kb on + strand, within GFF7288 at 6.384 kb on + strand, within GFF7288 at 6.384 kb on + strand, within GFF7288 at 6.385 kb on - strand, within GFF7288 at 6.540 kb on + strand, within GFF7288 at 6.540 kb on + strand, within GFF7288 at 6.541 kb on - strand, within GFF7288 at 6.541 kb on - strand, within GFF7288 at 6.597 kb on + strand, within GFF7288 at 6.598 kb on - strand, within GFF7288 at 6.660 kb on + strand, within GFF7288 at 6.681 kb on + strand, within GFF7288 at 6.684 kb on + strand, within GFF7288 at 6.756 kb on + strand, within GFF7288 at 6.756 kb on + strand, within GFF7288 at 6.810 kb on + strand, within GFF7288 at 6.996 kb on + strand, within GFF7288 at 6.996 kb on + strand, within GFF7288 at 6.997 kb on - strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.006 kb on - strand, within GFF7288 at 7.006 kb on - strand, within GFF7288 at 7.006 kb on - strand, within GFF7288
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 4,684 + GFF7286 0.66 +0.1 4,684 + GFF7286 0.66 -0.9 4,684 + GFF7286 0.66 -0.0 4,684 + GFF7286 0.66 +0.1 4,684 + GFF7286 0.66 -0.2 4,684 + GFF7286 0.66 -0.2 4,685 - GFF7286 0.66 -0.2 4,685 - GFF7286 0.66 +0.0 4,747 + GFF7286 0.72 +0.6 4,876 + GFF7286 0.85 -0.2 4,876 + GFF7286 0.85 -1.2 4,876 + GFF7286 0.85 -0.5 4,877 - GFF7286 0.85 +1.5 4,877 - GFF7286 0.85 +0.3 4,877 - GFF7286 0.85 +2.8 5,082 + -0.5 5,082 + +0.2 5,082 + +1.4 5,082 + +0.5 5,083 - -1.2 5,083 - -0.6 5,282 + GFF7287 0.25 +1.1 5,283 - GFF7287 0.25 +2.0 5,478 + GFF7287 0.43 +0.3 5,661 + GFF7287 0.61 +0.3 5,724 + GFF7287 0.67 +0.6 5,724 + GFF7287 0.67 -0.2 5,725 - GFF7287 0.67 -0.4 5,725 - GFF7287 0.67 +0.2 5,725 - GFF7287 0.67 +0.4 5,725 - GFF7287 0.67 -0.3 5,787 + GFF7287 0.73 -0.5 5,787 + GFF7287 0.73 -1.1 5,979 + +1.2 5,979 + -1.2 6,060 + +0.0 6,061 - +0.6 6,213 + -0.0 6,214 - +0.1 6,244 - -0.2 6,294 + GFF7288 0.12 -1.7 6,294 + GFF7288 0.12 +1.8 6,295 - GFF7288 0.12 +0.6 6,295 - GFF7288 0.12 -0.4 6,295 - GFF7288 0.12 -0.1 6,295 - GFF7288 0.12 -0.6 6,295 - GFF7288 0.12 -0.0 6,384 + GFF7288 0.17 -0.9 6,384 + GFF7288 0.17 +0.2 6,384 + GFF7288 0.17 -0.6 6,384 + GFF7288 0.17 +0.3 6,385 - GFF7288 0.18 +0.1 6,540 + GFF7288 0.27 -0.3 6,540 + GFF7288 0.27 -0.6 6,541 - GFF7288 0.27 -0.3 6,541 - GFF7288 0.27 -1.0 6,597 + GFF7288 0.31 -0.1 6,598 - GFF7288 0.31 -0.6 6,660 + GFF7288 0.34 -0.4 6,681 + GFF7288 0.36 -0.2 6,684 + GFF7288 0.36 +1.8 6,756 + GFF7288 0.40 +0.1 6,756 + GFF7288 0.40 -0.9 6,810 + GFF7288 0.44 -0.3 6,996 + GFF7288 0.55 +0.5 6,996 + GFF7288 0.55 -0.2 6,997 - GFF7288 0.55 +0.3 7,005 + GFF7288 0.56 +0.2 7,005 + GFF7288 0.56 -0.8 7,005 + GFF7288 0.56 +0.4 7,005 + GFF7288 0.56 -0.5 7,006 - GFF7288 0.56 -0.7 7,006 - GFF7288 0.56 -1.5 7,006 - GFF7288 0.56 -0.5
Or see this region's nucleotide sequence