Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7266 and GFF7267 overlap by 4 nucleotides GFF7267 and GFF7268 are separated by 39 nucleotides
GFF7266 - L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16), at 13,382 to 14,377
GFF7266
GFF7267 - L-talarate dehydratase @ Galactarate dehydratase (EC 4.2.1.42), at 14,374 to 15,573
GFF7267
GFF7268 - BUG/TctC family periplasmic protein, at 15,613 to 16,590
GFF7268
Position (kb) 14
15
16 Strain fitness (log2 ratio) -1
0
1 at 13.995 kb on + strand, within GFF7266 at 14.134 kb on - strand, within GFF7266 at 15.077 kb on + strand, within GFF7267 at 15.078 kb on - strand, within GFF7267 at 15.078 kb on - strand, within GFF7267 at 15.302 kb on + strand, within GFF7267 at 15.303 kb on - strand, within GFF7267 at 15.303 kb on - strand, within GFF7267 at 15.303 kb on - strand, within GFF7267 at 15.463 kb on + strand at 15.539 kb on + strand at 15.890 kb on + strand, within GFF7268 at 16.034 kb on + strand, within GFF7268 at 16.035 kb on - strand, within GFF7268 at 16.035 kb on - strand, within GFF7268 at 16.077 kb on - strand, within GFF7268 at 16.077 kb on - strand, within GFF7268 at 16.077 kb on - strand, within GFF7268 at 16.118 kb on + strand, within GFF7268 at 16.119 kb on - strand, within GFF7268 at 16.149 kb on - strand, within GFF7268 at 16.254 kb on - strand, within GFF7268 at 16.322 kb on + strand, within GFF7268
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,995 + GFF7266 0.62 -0.1 14,134 - GFF7266 0.76 +0.2 15,077 + GFF7267 0.59 -0.1 15,078 - GFF7267 0.59 -0.7 15,078 - GFF7267 0.59 +0.7 15,302 + GFF7267 0.77 -0.3 15,303 - GFF7267 0.77 -0.6 15,303 - GFF7267 0.77 -0.1 15,303 - GFF7267 0.77 -0.8 15,463 + -0.4 15,539 + -0.3 15,890 + GFF7268 0.28 -1.0 16,034 + GFF7268 0.43 -0.2 16,035 - GFF7268 0.43 -0.6 16,035 - GFF7268 0.43 +1.2 16,077 - GFF7268 0.47 +0.4 16,077 - GFF7268 0.47 -0.6 16,077 - GFF7268 0.47 -0.1 16,118 + GFF7268 0.52 +0.4 16,119 - GFF7268 0.52 +0.0 16,149 - GFF7268 0.55 +1.7 16,254 - GFF7268 0.66 +0.5 16,322 + GFF7268 0.72 +0.0
Or see this region's nucleotide sequence