Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7095 and GFF7096 are separated by 72 nucleotides GFF7096 and GFF7097 are separated by 43 nucleotides GFF7097 and GFF7098 are separated by 48 nucleotides GFF7098 and GFF7099 are separated by 47 nucleotides
GFF7095 - BUG/TctC family periplasmic protein, at 14,673 to 14,948
GFF7095
GFF7096 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.52), at 15,021 to 15,842
GFF7096
GFF7097 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 15,886 to 17,340
GFF7097
GFF7098 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-), at 17,389 to 18,222
GFF7098
GFF7099 - 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10), at 18,270 to 18,701
GFF7099
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -2
-1
0
1 at 15.022 kb on + strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.148 kb on + strand, within GFF7096 at 15.148 kb on + strand, within GFF7096 at 15.149 kb on - strand, within GFF7096 at 15.149 kb on - strand, within GFF7096 at 15.337 kb on + strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.412 kb on + strand, within GFF7096 at 15.413 kb on - strand, within GFF7096 at 15.491 kb on - strand, within GFF7096 at 15.574 kb on + strand, within GFF7096 at 15.574 kb on + strand, within GFF7096 at 15.575 kb on - strand, within GFF7096 at 15.663 kb on + strand, within GFF7096 at 15.663 kb on + strand, within GFF7096 at 15.663 kb on + strand, within GFF7096 at 15.663 kb on + strand, within GFF7096 at 15.663 kb on + strand, within GFF7096 at 15.664 kb on - strand, within GFF7096 at 15.664 kb on - strand, within GFF7096 at 15.664 kb on - strand, within GFF7096 at 15.664 kb on - strand, within GFF7096 at 15.698 kb on + strand, within GFF7096 at 15.698 kb on + strand, within GFF7096 at 15.698 kb on + strand, within GFF7096 at 15.698 kb on + strand, within GFF7096 at 15.698 kb on + strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.757 kb on + strand, within GFF7096 at 15.758 kb on - strand, within GFF7096 at 15.758 kb on - strand, within GFF7096 at 15.758 kb on - strand, within GFF7096 at 15.905 kb on + strand at 15.905 kb on + strand at 15.905 kb on + strand at 15.905 kb on + strand at 15.905 kb on + strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.921 kb on - strand at 15.921 kb on - strand at 15.921 kb on - strand at 16.031 kb on + strand at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.085 kb on + strand, within GFF7097 at 16.085 kb on + strand, within GFF7097 at 16.086 kb on - strand, within GFF7097 at 16.101 kb on - strand, within GFF7097 at 16.232 kb on + strand, within GFF7097 at 16.232 kb on + strand, within GFF7097 at 16.232 kb on + strand, within GFF7097 at 16.232 kb on + strand, within GFF7097 at 16.233 kb on - strand, within GFF7097 at 16.233 kb on - strand, within GFF7097 at 16.430 kb on + strand, within GFF7097 at 16.543 kb on + strand, within GFF7097 at 16.543 kb on + strand, within GFF7097 at 16.543 kb on + strand, within GFF7097 at 16.544 kb on - strand, within GFF7097 at 16.647 kb on + strand, within GFF7097 at 16.647 kb on + strand, within GFF7097 at 16.647 kb on + strand, within GFF7097 at 16.647 kb on + strand, within GFF7097 at 16.648 kb on - strand, within GFF7097 at 16.648 kb on - strand, within GFF7097 at 16.955 kb on + strand, within GFF7097 at 16.956 kb on - strand, within GFF7097 at 16.991 kb on + strand, within GFF7097 at 16.991 kb on + strand, within GFF7097 at 16.992 kb on - strand, within GFF7097 at 16.992 kb on - strand, within GFF7097 at 17.003 kb on + strand, within GFF7097 at 17.004 kb on - strand, within GFF7097 at 17.004 kb on - strand, within GFF7097 at 17.004 kb on - strand, within GFF7097 at 17.256 kb on + strand at 17.366 kb on + strand at 17.366 kb on + strand at 17.366 kb on + strand at 17.644 kb on + strand, within GFF7098 at 17.644 kb on + strand, within GFF7098 at 17.644 kb on + strand, within GFF7098 at 17.644 kb on + strand, within GFF7098 at 17.644 kb on + strand, within GFF7098 at 17.645 kb on - strand, within GFF7098 at 17.645 kb on - strand, within GFF7098 at 17.645 kb on - strand, within GFF7098 at 17.717 kb on + strand, within GFF7098 at 17.717 kb on + strand, within GFF7098 at 17.717 kb on + strand, within GFF7098 at 17.717 kb on + strand, within GFF7098 at 17.717 kb on + strand, within GFF7098 at 17.717 kb on + strand, within GFF7098 at 17.717 kb on + strand, within GFF7098 at 17.717 kb on + strand, within GFF7098 at 17.717 kb on + strand, within GFF7098 at 17.717 kb on + strand, within GFF7098 at 17.718 kb on - strand, within GFF7098 at 17.718 kb on - strand, within GFF7098 at 17.718 kb on - strand, within GFF7098 at 17.718 kb on - strand, within GFF7098 at 17.718 kb on - strand, within GFF7098 at 17.718 kb on - strand, within GFF7098 at 17.718 kb on - strand, within GFF7098 at 17.718 kb on - strand, within GFF7098 at 17.718 kb on - strand, within GFF7098 at 17.795 kb on + strand, within GFF7098 at 17.795 kb on + strand, within GFF7098 at 17.795 kb on + strand, within GFF7098 at 17.795 kb on + strand, within GFF7098 at 17.795 kb on + strand, within GFF7098 at 17.795 kb on + strand, within GFF7098 at 17.795 kb on + strand, within GFF7098 at 17.796 kb on - strand, within GFF7098 at 17.796 kb on - strand, within GFF7098 at 17.796 kb on - strand, within GFF7098 at 17.796 kb on - strand, within GFF7098 at 17.796 kb on - strand, within GFF7098 at 17.984 kb on + strand, within GFF7098 at 17.985 kb on - strand, within GFF7098 at 18.105 kb on - strand, within GFF7098 at 18.313 kb on + strand at 18.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 15,022 + -1.2 15,023 - +0.6 15,023 - +0.2 15,023 - -0.6 15,023 - +0.0 15,023 - +0.0 15,023 - +1.0 15,025 + -0.1 15,025 + -0.3 15,025 + +0.5 15,025 + -1.1 15,025 + -2.5 15,025 + -1.3 15,026 - +0.0 15,026 - -1.3 15,026 - -0.1 15,026 - -1.5 15,026 - -0.6 15,026 - -1.4 15,026 - -0.2 15,026 - -0.4 15,148 + GFF7096 0.15 -0.8 15,148 + GFF7096 0.15 -0.0 15,149 - GFF7096 0.16 +0.4 15,149 - GFF7096 0.16 +0.0 15,337 + GFF7096 0.38 +0.1 15,338 - GFF7096 0.39 -0.3 15,338 - GFF7096 0.39 -0.4 15,338 - GFF7096 0.39 +1.3 15,338 - GFF7096 0.39 -0.1 15,412 + GFF7096 0.48 -0.1 15,413 - GFF7096 0.48 +0.4 15,491 - GFF7096 0.57 +0.4 15,574 + GFF7096 0.67 +1.0 15,574 + GFF7096 0.67 +1.2 15,575 - GFF7096 0.67 +0.0 15,663 + GFF7096 0.78 -0.2 15,663 + GFF7096 0.78 +0.2 15,663 + GFF7096 0.78 +0.8 15,663 + GFF7096 0.78 -0.4 15,663 + GFF7096 0.78 -1.0 15,664 - GFF7096 0.78 -0.4 15,664 - GFF7096 0.78 -0.3 15,664 - GFF7096 0.78 -1.0 15,664 - GFF7096 0.78 -0.5 15,698 + GFF7096 0.82 +0.0 15,698 + GFF7096 0.82 +0.2 15,698 + GFF7096 0.82 -0.4 15,698 + GFF7096 0.82 +0.0 15,698 + GFF7096 0.82 +0.1 15,699 - GFF7096 0.82 -0.3 15,699 - GFF7096 0.82 +0.3 15,699 - GFF7096 0.82 -0.1 15,699 - GFF7096 0.82 +0.4 15,699 - GFF7096 0.82 -0.3 15,699 - GFF7096 0.82 +1.5 15,699 - GFF7096 0.82 -0.1 15,757 + GFF7096 0.90 +0.3 15,758 - GFF7096 0.90 -0.5 15,758 - GFF7096 0.90 +0.1 15,758 - GFF7096 0.90 +0.4 15,905 + +0.3 15,905 + +0.5 15,905 + -0.7 15,905 + +0.5 15,905 + -0.7 15,906 - +0.0 15,906 - +0.4 15,906 - -0.5 15,906 - +0.3 15,906 - -0.6 15,906 - +1.3 15,906 - +0.2 15,920 + -1.3 15,920 + -0.3 15,920 + +0.0 15,920 + +0.1 15,920 + +0.2 15,920 + -0.3 15,920 + -0.7 15,921 - -1.0 15,921 - -0.1 15,921 - -0.1 16,031 + +1.3 16,079 + GFF7097 0.13 +0.5 16,079 + GFF7097 0.13 +1.4 16,079 + GFF7097 0.13 -0.0 16,079 + GFF7097 0.13 +0.4 16,079 + GFF7097 0.13 +1.5 16,079 + GFF7097 0.13 +1.0 16,079 + GFF7097 0.13 -0.1 16,080 - GFF7097 0.13 -0.1 16,080 - GFF7097 0.13 -0.9 16,080 - GFF7097 0.13 +0.3 16,080 - GFF7097 0.13 +0.5 16,080 - GFF7097 0.13 +0.2 16,080 - GFF7097 0.13 -1.1 16,080 - GFF7097 0.13 -0.7 16,080 - GFF7097 0.13 -0.0 16,080 - GFF7097 0.13 -0.8 16,080 - GFF7097 0.13 -0.3 16,080 - GFF7097 0.13 +1.3 16,080 - GFF7097 0.13 -0.8 16,080 - GFF7097 0.13 -0.4 16,080 - GFF7097 0.13 +1.2 16,085 + GFF7097 0.14 +1.1 16,085 + GFF7097 0.14 +0.9 16,086 - GFF7097 0.14 +0.4 16,101 - GFF7097 0.15 +0.9 16,232 + GFF7097 0.24 -0.3 16,232 + GFF7097 0.24 -0.1 16,232 + GFF7097 0.24 -0.5 16,232 + GFF7097 0.24 -0.5 16,233 - GFF7097 0.24 -0.2 16,233 - GFF7097 0.24 -0.0 16,430 + GFF7097 0.37 +0.1 16,543 + GFF7097 0.45 -0.2 16,543 + GFF7097 0.45 -0.0 16,543 + GFF7097 0.45 -0.8 16,544 - GFF7097 0.45 -0.5 16,647 + GFF7097 0.52 -0.5 16,647 + GFF7097 0.52 -0.7 16,647 + GFF7097 0.52 +0.9 16,647 + GFF7097 0.52 +1.3 16,648 - GFF7097 0.52 -0.2 16,648 - GFF7097 0.52 +0.2 16,955 + GFF7097 0.73 +0.5 16,956 - GFF7097 0.74 -0.2 16,991 + GFF7097 0.76 +1.3 16,991 + GFF7097 0.76 -0.2 16,992 - GFF7097 0.76 +0.0 16,992 - GFF7097 0.76 -0.1 17,003 + GFF7097 0.77 -0.0 17,004 - GFF7097 0.77 -0.7 17,004 - GFF7097 0.77 -0.1 17,004 - GFF7097 0.77 -0.3 17,256 + +0.0 17,366 + -1.0 17,366 + +1.0 17,366 + -0.2 17,644 + GFF7098 0.31 +0.2 17,644 + GFF7098 0.31 -0.6 17,644 + GFF7098 0.31 -0.2 17,644 + GFF7098 0.31 +1.1 17,644 + GFF7098 0.31 -1.0 17,645 - GFF7098 0.31 -0.4 17,645 - GFF7098 0.31 +1.4 17,645 - GFF7098 0.31 +1.1 17,717 + GFF7098 0.39 -0.8 17,717 + GFF7098 0.39 +1.6 17,717 + GFF7098 0.39 -0.1 17,717 + GFF7098 0.39 -1.1 17,717 + GFF7098 0.39 -0.6 17,717 + GFF7098 0.39 -0.7 17,717 + GFF7098 0.39 -1.4 17,717 + GFF7098 0.39 -0.7 17,717 + GFF7098 0.39 -0.7 17,717 + GFF7098 0.39 -0.3 17,718 - GFF7098 0.39 -0.8 17,718 - GFF7098 0.39 +0.3 17,718 - GFF7098 0.39 +0.7 17,718 - GFF7098 0.39 +0.0 17,718 - GFF7098 0.39 +0.1 17,718 - GFF7098 0.39 -0.7 17,718 - GFF7098 0.39 +0.2 17,718 - GFF7098 0.39 -0.5 17,718 - GFF7098 0.39 -1.8 17,795 + GFF7098 0.49 -0.3 17,795 + GFF7098 0.49 -0.0 17,795 + GFF7098 0.49 -0.1 17,795 + GFF7098 0.49 -0.6 17,795 + GFF7098 0.49 -0.2 17,795 + GFF7098 0.49 -0.5 17,795 + GFF7098 0.49 -0.1 17,796 - GFF7098 0.49 -0.4 17,796 - GFF7098 0.49 +0.2 17,796 - GFF7098 0.49 -0.6 17,796 - GFF7098 0.49 +0.0 17,796 - GFF7098 0.49 +0.7 17,984 + GFF7098 0.71 +0.9 17,985 - GFF7098 0.71 -0.2 18,105 - GFF7098 0.86 +0.6 18,313 + -0.6 18,313 + -0.1
Or see this region's nucleotide sequence