Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7093 and GFF7094 are separated by 52 nucleotides GFF7094 and GFF7095 are separated by 54 nucleotides GFF7095 and GFF7096 are separated by 72 nucleotides GFF7096 and GFF7097 are separated by 43 nucleotides
GFF7093 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 14,228 to 14,380
GFF7093
GFF7094 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 14,433 to 14,618
GFF7094
GFF7095 - BUG/TctC family periplasmic protein, at 14,673 to 14,948
GFF7095
GFF7096 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.52), at 15,021 to 15,842
GFF7096
GFF7097 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 15,886 to 17,340
GFF7097
Position (kb) 15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 14.167 kb on + strand at 14.167 kb on + strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.250 kb on - strand, within GFF7093 at 14.383 kb on + strand at 14.383 kb on + strand at 14.383 kb on + strand at 14.383 kb on + strand at 14.384 kb on - strand at 14.384 kb on - strand at 14.412 kb on - strand at 14.517 kb on + strand, within GFF7094 at 14.517 kb on + strand, within GFF7094 at 14.517 kb on + strand, within GFF7094 at 14.517 kb on + strand, within GFF7094 at 14.518 kb on - strand, within GFF7094 at 14.598 kb on + strand, within GFF7094 at 14.606 kb on - strand at 14.616 kb on + strand at 14.616 kb on + strand at 14.617 kb on - strand at 14.617 kb on - strand at 14.631 kb on + strand at 14.631 kb on + strand at 14.632 kb on - strand at 14.632 kb on - strand at 14.632 kb on - strand at 15.022 kb on + strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.148 kb on + strand, within GFF7096 at 15.148 kb on + strand, within GFF7096 at 15.149 kb on - strand, within GFF7096 at 15.149 kb on - strand, within GFF7096 at 15.337 kb on + strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.412 kb on + strand, within GFF7096 at 15.413 kb on - strand, within GFF7096 at 15.491 kb on - strand, within GFF7096 at 15.574 kb on + strand, within GFF7096 at 15.574 kb on + strand, within GFF7096 at 15.575 kb on - strand, within GFF7096 at 15.663 kb on + strand, within GFF7096 at 15.663 kb on + strand, within GFF7096 at 15.663 kb on + strand, within GFF7096 at 15.663 kb on + strand, within GFF7096 at 15.663 kb on + strand, within GFF7096 at 15.664 kb on - strand, within GFF7096 at 15.664 kb on - strand, within GFF7096 at 15.664 kb on - strand, within GFF7096 at 15.664 kb on - strand, within GFF7096 at 15.698 kb on + strand, within GFF7096 at 15.698 kb on + strand, within GFF7096 at 15.698 kb on + strand, within GFF7096 at 15.698 kb on + strand, within GFF7096 at 15.698 kb on + strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.699 kb on - strand, within GFF7096 at 15.757 kb on + strand, within GFF7096 at 15.758 kb on - strand, within GFF7096 at 15.758 kb on - strand, within GFF7096 at 15.758 kb on - strand, within GFF7096 at 15.905 kb on + strand at 15.905 kb on + strand at 15.905 kb on + strand at 15.905 kb on + strand at 15.905 kb on + strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.906 kb on - strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.921 kb on - strand at 15.921 kb on - strand at 15.921 kb on - strand at 16.031 kb on + strand at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.079 kb on + strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.080 kb on - strand, within GFF7097 at 16.085 kb on + strand, within GFF7097 at 16.085 kb on + strand, within GFF7097 at 16.086 kb on - strand, within GFF7097 at 16.101 kb on - strand, within GFF7097 at 16.232 kb on + strand, within GFF7097 at 16.232 kb on + strand, within GFF7097 at 16.232 kb on + strand, within GFF7097 at 16.232 kb on + strand, within GFF7097 at 16.233 kb on - strand, within GFF7097 at 16.233 kb on - strand, within GFF7097 at 16.430 kb on + strand, within GFF7097 at 16.543 kb on + strand, within GFF7097 at 16.543 kb on + strand, within GFF7097 at 16.543 kb on + strand, within GFF7097 at 16.544 kb on - strand, within GFF7097 at 16.647 kb on + strand, within GFF7097 at 16.647 kb on + strand, within GFF7097 at 16.647 kb on + strand, within GFF7097 at 16.647 kb on + strand, within GFF7097 at 16.648 kb on - strand, within GFF7097 at 16.648 kb on - strand, within GFF7097
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 14,167 + +1.0 14,167 + -0.3 14,168 - -0.3 14,168 - +1.0 14,168 - -0.7 14,168 - +0.0 14,168 - -0.0 14,168 - -0.6 14,168 - -0.3 14,250 - GFF7093 0.14 -0.2 14,383 + -0.5 14,383 + -0.5 14,383 + +0.2 14,383 + -0.6 14,384 - -0.1 14,384 - -0.1 14,412 - -0.3 14,517 + GFF7094 0.45 -0.4 14,517 + GFF7094 0.45 +0.7 14,517 + GFF7094 0.45 -0.5 14,517 + GFF7094 0.45 +0.2 14,518 - GFF7094 0.46 -1.1 14,598 + GFF7094 0.89 -0.1 14,606 - -1.0 14,616 + +2.1 14,616 + -0.4 14,617 - -0.4 14,617 - -0.5 14,631 + -0.7 14,631 + +0.2 14,632 - -0.5 14,632 - -0.1 14,632 - +1.6 15,022 + -1.2 15,023 - +0.6 15,023 - +0.2 15,023 - -0.6 15,023 - +0.0 15,023 - +0.0 15,023 - +1.0 15,025 + -0.1 15,025 + -0.3 15,025 + +0.5 15,025 + -1.1 15,025 + -2.5 15,025 + -1.3 15,026 - +0.0 15,026 - -1.3 15,026 - -0.1 15,026 - -1.5 15,026 - -0.6 15,026 - -1.4 15,026 - -0.2 15,026 - -0.4 15,148 + GFF7096 0.15 -0.8 15,148 + GFF7096 0.15 -0.0 15,149 - GFF7096 0.16 +0.4 15,149 - GFF7096 0.16 +0.0 15,337 + GFF7096 0.38 +0.1 15,338 - GFF7096 0.39 -0.3 15,338 - GFF7096 0.39 -0.4 15,338 - GFF7096 0.39 +1.3 15,338 - GFF7096 0.39 -0.1 15,412 + GFF7096 0.48 -0.1 15,413 - GFF7096 0.48 +0.4 15,491 - GFF7096 0.57 +0.4 15,574 + GFF7096 0.67 +1.0 15,574 + GFF7096 0.67 +1.2 15,575 - GFF7096 0.67 +0.0 15,663 + GFF7096 0.78 -0.2 15,663 + GFF7096 0.78 +0.2 15,663 + GFF7096 0.78 +0.8 15,663 + GFF7096 0.78 -0.4 15,663 + GFF7096 0.78 -1.0 15,664 - GFF7096 0.78 -0.4 15,664 - GFF7096 0.78 -0.3 15,664 - GFF7096 0.78 -1.0 15,664 - GFF7096 0.78 -0.5 15,698 + GFF7096 0.82 +0.0 15,698 + GFF7096 0.82 +0.2 15,698 + GFF7096 0.82 -0.4 15,698 + GFF7096 0.82 +0.0 15,698 + GFF7096 0.82 +0.1 15,699 - GFF7096 0.82 -0.3 15,699 - GFF7096 0.82 +0.3 15,699 - GFF7096 0.82 -0.1 15,699 - GFF7096 0.82 +0.4 15,699 - GFF7096 0.82 -0.3 15,699 - GFF7096 0.82 +1.5 15,699 - GFF7096 0.82 -0.1 15,757 + GFF7096 0.90 +0.3 15,758 - GFF7096 0.90 -0.5 15,758 - GFF7096 0.90 +0.1 15,758 - GFF7096 0.90 +0.4 15,905 + +0.3 15,905 + +0.5 15,905 + -0.7 15,905 + +0.5 15,905 + -0.7 15,906 - +0.0 15,906 - +0.4 15,906 - -0.5 15,906 - +0.3 15,906 - -0.6 15,906 - +1.3 15,906 - +0.2 15,920 + -1.3 15,920 + -0.3 15,920 + +0.0 15,920 + +0.1 15,920 + +0.2 15,920 + -0.3 15,920 + -0.7 15,921 - -1.0 15,921 - -0.1 15,921 - -0.1 16,031 + +1.3 16,079 + GFF7097 0.13 +0.5 16,079 + GFF7097 0.13 +1.4 16,079 + GFF7097 0.13 -0.0 16,079 + GFF7097 0.13 +0.4 16,079 + GFF7097 0.13 +1.5 16,079 + GFF7097 0.13 +1.0 16,079 + GFF7097 0.13 -0.1 16,080 - GFF7097 0.13 -0.1 16,080 - GFF7097 0.13 -0.9 16,080 - GFF7097 0.13 +0.3 16,080 - GFF7097 0.13 +0.5 16,080 - GFF7097 0.13 +0.2 16,080 - GFF7097 0.13 -1.1 16,080 - GFF7097 0.13 -0.7 16,080 - GFF7097 0.13 -0.0 16,080 - GFF7097 0.13 -0.8 16,080 - GFF7097 0.13 -0.3 16,080 - GFF7097 0.13 +1.3 16,080 - GFF7097 0.13 -0.8 16,080 - GFF7097 0.13 -0.4 16,080 - GFF7097 0.13 +1.2 16,085 + GFF7097 0.14 +1.1 16,085 + GFF7097 0.14 +0.9 16,086 - GFF7097 0.14 +0.4 16,101 - GFF7097 0.15 +0.9 16,232 + GFF7097 0.24 -0.3 16,232 + GFF7097 0.24 -0.1 16,232 + GFF7097 0.24 -0.5 16,232 + GFF7097 0.24 -0.5 16,233 - GFF7097 0.24 -0.2 16,233 - GFF7097 0.24 -0.0 16,430 + GFF7097 0.37 +0.1 16,543 + GFF7097 0.45 -0.2 16,543 + GFF7097 0.45 -0.0 16,543 + GFF7097 0.45 -0.8 16,544 - GFF7097 0.45 -0.5 16,647 + GFF7097 0.52 -0.5 16,647 + GFF7097 0.52 -0.7 16,647 + GFF7097 0.52 +0.9 16,647 + GFF7097 0.52 +1.3 16,648 - GFF7097 0.52 -0.2 16,648 - GFF7097 0.52 +0.2
Or see this region's nucleotide sequence