Strain Fitness in Variovorax sp. SCN45 around GFF7087

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
8,611	-				+2.2
8,651	-				-0.6
8,657	+				-0.2
8,658	-				-0.1
8,658	-				-0.8
8,680	+				+0.1
8,680	+				+0.0
8,680	+				-0.5
8,681	-				+0.1
8,681	-				-0.4
8,873	+		GFF7086	0.28	-1.0
8,874	-		GFF7086	0.28	-0.8
8,874	-		GFF7086	0.28	-0.6
8,942	+		GFF7086	0.37	-0.0
8,942	+		GFF7086	0.37	-0.1
8,942	+		GFF7086	0.37	-0.1
8,943	-		GFF7086	0.37	+0.0
8,943	-		GFF7086	0.37	-0.9
8,975	+		GFF7086	0.41	-0.1
8,976	-		GFF7086	0.41	-0.4
8,997	+		GFF7086	0.44	+0.1
8,997	+		GFF7086	0.44	+1.9
9,023	+		GFF7086	0.47	+0.7
9,023	+		GFF7086	0.47	+0.2
9,023	+		GFF7086	0.47	-0.4
9,024	-		GFF7086	0.48	-0.5
9,024	-		GFF7086	0.48	-0.1
9,024	-		GFF7086	0.48	+0.0
9,024	-		GFF7086	0.48	-0.3
9,024	-		GFF7086	0.48	+0.2
9,039	+		GFF7086	0.49	+0.1
9,072	+		GFF7086	0.54	-0.4
9,073	-		GFF7086	0.54	+0.0
9,278	+		GFF7086	0.80	-0.2
9,278	+		GFF7086	0.80	-2.4
9,278	+		GFF7086	0.80	-0.4
9,278	+		GFF7086	0.80	-0.1
9,278	+		GFF7086	0.80	-1.0
9,278	+		GFF7086	0.80	+2.9
9,278	+		GFF7086	0.80	+0.3
9,278	+		GFF7086	0.80	+1.0
9,278	+		GFF7086	0.80	+0.4
9,278	+		GFF7086	0.80	-0.3
9,278	+		GFF7086	0.80	+0.9
9,278	+		GFF7086	0.80	-1.7
9,278	+		GFF7086	0.80	-0.1
9,278	+		GFF7086	0.80	-1.1
9,278	+		GFF7086	0.80	-1.1
9,278	+		GFF7086	0.80	-0.8
9,278	+		GFF7086	0.80	-0.9
9,279	-		GFF7086	0.80	-0.5
9,279	-		GFF7086	0.80	+1.9
9,279	-		GFF7086	0.80	-0.3
9,279	-		GFF7086	0.80	+0.8
9,279	-		GFF7086	0.80	-0.4
9,279	-		GFF7086	0.80	-0.3
9,290	+		GFF7086	0.82	-0.5
9,452	+				-0.9
9,452	+				-0.2
9,453	-				-0.4
9,456	+				+0.0
9,456	+				-0.4
9,456	+				+0.6
9,457	-				+0.0
9,742	+		GFF7087	0.19	+0.3
9,742	+		GFF7087	0.19	+0.5
9,742	+		GFF7087	0.19	-0.1
9,742	+		GFF7087	0.19	-0.4
9,743	-		GFF7087	0.19	-0.3
9,743	-		GFF7087	0.19	+0.2
9,743	-		GFF7087	0.19	-0.1
9,743	-		GFF7087	0.19	+0.5
9,743	-		GFF7087	0.19	-0.1
9,756	+		GFF7087	0.21	-0.0
9,756	+		GFF7087	0.21	-0.6
9,756	+		GFF7087	0.21	+0.0
9,756	+		GFF7087	0.21	-0.6
9,756	+		GFF7087	0.21	-0.3
9,757	-		GFF7087	0.21	+0.3
9,757	-		GFF7087	0.21	-0.7
9,757	-		GFF7087	0.21	-0.5
9,757	-		GFF7087	0.21	+1.6
9,802	+		GFF7087	0.25	-0.2
9,802	+		GFF7087	0.25	-0.5
9,803	-		GFF7087	0.25	-0.9
9,853	-		GFF7087	0.30	+0.6
9,853	-		GFF7087	0.30	+0.0
9,853	-		GFF7087	0.30	-0.8
9,853	-		GFF7087	0.30	+0.2
9,987	+		GFF7087	0.43	-0.5
9,987	+		GFF7087	0.43	+0.1
9,987	+		GFF7087	0.43	-0.6
9,987	+		GFF7087	0.43	-1.0
9,987	+		GFF7087	0.43	-0.1
9,988	-		GFF7087	0.43	+0.7
9,988	-		GFF7087	0.43	-0.8
9,988	-		GFF7087	0.43	+0.3
9,988	-		GFF7087	0.43	-0.4
10,004	+		GFF7087	0.45	+0.2
10,005	-		GFF7087	0.45	-0.8
10,029	+		GFF7087	0.47	+0.9
10,030	-		GFF7087	0.48	+0.7
10,030	-		GFF7087	0.48	+2.2
10,030	-		GFF7087	0.48	+0.5
10,030	-		GFF7087	0.48	-0.6
10,030	-		GFF7087	0.48	-0.4
10,331	+		GFF7087	0.77	+0.9
10,331	+		GFF7087	0.77	-0.6
10,331	+		GFF7087	0.77	-0.8
10,331	+		GFF7087	0.77	-0.4
10,331	+		GFF7087	0.77	+1.4
10,331	+		GFF7087	0.77	-0.2
10,332	-		GFF7087	0.77	-0.4
10,332	-		GFF7087	0.77	-0.3
10,332	-		GFF7087	0.77	+0.0
10,332	-		GFF7087	0.77	-0.1
10,332	-		GFF7087	0.77	+0.6
10,431	-		GFF7087	0.87	+1.5
10,464	+				+0.6
10,465	-				-0.5
10,465	-				-1.1
10,484	+				+0.6
10,485	-				+0.7
10,556	+				-0.5
10,557	-				-0.3
10,573	+				-0.6
10,573	+				-0.8
10,574	-				+0.1
10,574	-				-0.1
10,574	-				+0.1
10,616	+				-1.0
10,617	-				-1.3
10,617	-				-0.1
10,763	+		GFF7088	0.13	-0.1
10,763	+		GFF7088	0.13	+0.1
10,763	+		GFF7088	0.13	-1.5
10,763	+		GFF7088	0.13	+0.3
10,763	+		GFF7088	0.13	-0.5
10,763	+		GFF7088	0.13	-0.2
10,763	+		GFF7088	0.13	-0.7
10,764	-		GFF7088	0.13	+0.2
10,764	-		GFF7088	0.13	-1.1
10,764	-		GFF7088	0.13	-1.5
10,764	-		GFF7088	0.13	+0.3
10,764	-		GFF7088	0.13	+0.9
10,764	-		GFF7088	0.13	-0.2
10,764	-		GFF7088	0.13	+0.2
10,764	-		GFF7088	0.13	+1.9
10,874	+		GFF7088	0.21	+0.7
10,874	+		GFF7088	0.21	+0.3
10,875	-		GFF7088	0.21	-0.6
10,900	+		GFF7088	0.23	-0.8
10,900	+		GFF7088	0.23	-1.8
10,900	+		GFF7088	0.23	-0.5
10,900	+		GFF7088	0.23	-0.2
10,900	+		GFF7088	0.23	-1.0
10,901	-		GFF7088	0.23	-1.1
10,901	-		GFF7088	0.23	+0.4
10,901	-		GFF7088	0.23	-0.6
10,901	-		GFF7088	0.23	+0.0
10,901	-		GFF7088	0.23	+0.1
10,901	-		GFF7088	0.23	-0.0
10,901	-		GFF7088	0.23	-0.1
10,901	-		GFF7088	0.23	-0.2
10,901	-		GFF7088	0.23	-0.7
10,910	+		GFF7088	0.23	-0.5
10,911	-		GFF7088	0.24	+0.4
10,925	+		GFF7088	0.25	+0.3
10,925	+		GFF7088	0.25	-0.1
10,926	-		GFF7088	0.25	-0.3
10,926	-		GFF7088	0.25	-0.5
10,926	-		GFF7088	0.25	-0.7
10,926	-		GFF7088	0.25	-0.6
10,926	-		GFF7088	0.25	-0.5
10,973	+		GFF7088	0.28	-0.1
10,973	+		GFF7088	0.28	-0.0
10,973	+		GFF7088	0.28	-0.7
10,974	-		GFF7088	0.28	+0.5
10,984	+		GFF7088	0.29	-0.7
10,984	+		GFF7088	0.29	-0.3
10,984	+		GFF7088	0.29	-0.1
10,985	-		GFF7088	0.29	-0.6
10,985	-		GFF7088	0.29	-0.4
11,033	+		GFF7088	0.32	-1.5
11,033	+		GFF7088	0.32	-0.4
11,033	+		GFF7088	0.32	-0.5
11,033	+		GFF7088	0.32	+0.5
11,033	+		GFF7088	0.32	-0.6
11,034	-		GFF7088	0.33	-0.1
11,034	-		GFF7088	0.33	+0.0
11,034	-		GFF7088	0.33	-0.2
11,034	-		GFF7088	0.33	-0.1
11,079	+		GFF7088	0.36	-0.1
11,080	-		GFF7088	0.36	+0.2
11,080	-		GFF7088	0.36	+1.3
11,087	+		GFF7088	0.36	-0.1
11,087	+		GFF7088	0.36	+0.1
11,087	+		GFF7088	0.36	-0.3
11,087	+		GFF7088	0.36	-0.1
11,088	-		GFF7088	0.36	+0.3
11,088	-		GFF7088	0.36	-0.1
11,088	-		GFF7088	0.36	-0.8
11,088	-		GFF7088	0.36	-1.0
11,088	-		GFF7088	0.36	-0.6
11,088	-		GFF7088	0.36	+1.2
11,088	-		GFF7088	0.36	-0.2
11,088	-		GFF7088	0.36	+0.1
11,088	-		GFF7088	0.36	-1.2
11,088	-		GFF7088	0.36	+1.0
11,088	-		GFF7088	0.36	-0.2
11,230	+		GFF7088	0.47	-0.1
11,230	+		GFF7088	0.47	+0.6
11,230	+		GFF7088	0.47	+0.3
11,231	-		GFF7088	0.47	-0.7
11,234	+		GFF7088	0.47	-2.3
11,234	+		GFF7088	0.47	-0.2
11,234	+		GFF7088	0.47	+0.9
11,234	+		GFF7088	0.47	-0.5
11,234	+		GFF7088	0.47	-0.1
11,234	+		GFF7088	0.47	-0.3
11,234	+		GFF7088	0.47	-1.0
11,234	+		GFF7088	0.47	-0.6
11,234	+		GFF7088	0.47	+0.3
11,234	+		GFF7088	0.47	-0.4
11,234	+		GFF7088	0.47	+0.3
11,235	-		GFF7088	0.47	-0.5
11,235	-		GFF7088	0.47	+0.3
11,235	-		GFF7088	0.47	-0.5
11,235	-		GFF7088	0.47	-0.5
11,235	-		GFF7088	0.47	-0.1
11,235	-		GFF7088	0.47	+1.1
11,235	-		GFF7088	0.47	+0.1
11,324	+		GFF7088	0.54	-0.4
11,414	+		GFF7088	0.60	-0.7
11,414	+		GFF7088	0.60	-0.6
11,414	+		GFF7088	0.60	+0.7
11,414	+		GFF7088	0.60	-2.1
11,414	+		GFF7088	0.60	-0.1
11,414	+		GFF7088	0.60	+0.0
11,414	+		GFF7088	0.60	+0.3
11,415	-		GFF7088	0.60	-0.6
11,441	+		GFF7088	0.62	+1.6
11,441	+		GFF7088	0.62	-0.4
11,442	-		GFF7088	0.62	+2.9
11,476	+		GFF7088	0.65	-0.5
11,476	+		GFF7088	0.65	-0.5
11,476	+		GFF7088	0.65	+0.6
11,476	+		GFF7088	0.65	+0.5
11,476	+		GFF7088	0.65	-0.5
11,477	-		GFF7088	0.65	-0.2
11,477	-		GFF7088	0.65	-0.6
11,522	+		GFF7088	0.68	-1.2
11,522	+		GFF7088	0.68	+1.0
11,522	+		GFF7088	0.68	-0.3
11,523	-		GFF7088	0.68	+0.4