Strain Fitness in Variovorax sp. SCN45 around GFF6908

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6906 and GFF6907 are separated by 44 nucleotidesGFF6907 and GFF6908 overlap by 9 nucleotidesGFF6908 and GFF6909 overlap by 4 nucleotides GFF6906 - Transcriptional regulator, MarR family, at 41,789 to 42,214 GFF6906 GFF6907 - Acetyltransferase, GNAT family, at 42,259 to 42,867 GFF6907 GFF6908 - putative membrane protein, at 42,859 to 43,572 GFF6908 GFF6909 - Amidohydrolase, at 43,569 to 44,996 GFF6909 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1at 42.084 kb on + strand, within GFF6906at 42.084 kb on + strand, within GFF6906at 42.084 kb on + strand, within GFF6906at 42.085 kb on - strand, within GFF6906at 42.085 kb on - strand, within GFF6906at 42.262 kb on + strandat 42.262 kb on + strandat 42.262 kb on + strandat 42.263 kb on - strandat 42.263 kb on - strandat 42.263 kb on - strandat 42.264 kb on + strandat 42.264 kb on + strandat 42.398 kb on - strand, within GFF6907at 43.124 kb on + strand, within GFF6908at 43.124 kb on + strand, within GFF6908at 43.125 kb on - strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.403 kb on + strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.404 kb on - strand, within GFF6908at 43.861 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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42,084 + GFF6906 0.69 +0.7
42,084 + GFF6906 0.69 +0.3
42,084 + GFF6906 0.69 -0.1
42,085 - GFF6906 0.69 -0.5
42,085 - GFF6906 0.69 +0.3
42,262 + -1.3
42,262 + +0.0
42,262 + +0.7
42,263 - -0.0
42,263 - -1.0
42,263 - +0.7
42,264 + -1.6
42,264 + -0.1
42,398 - GFF6907 0.23 +0.7
43,124 + GFF6908 0.37 +1.4
43,124 + GFF6908 0.37 -1.2
43,125 - GFF6908 0.37 -0.4
43,403 + GFF6908 0.76 -0.7
43,403 + GFF6908 0.76 -0.7
43,403 + GFF6908 0.76 -1.9
43,403 + GFF6908 0.76 +0.6
43,403 + GFF6908 0.76 -0.5
43,403 + GFF6908 0.76 +0.5
43,403 + GFF6908 0.76 -0.4
43,403 + GFF6908 0.76 -0.4
43,404 - GFF6908 0.76 +0.2
43,404 - GFF6908 0.76 +0.3
43,404 - GFF6908 0.76 +0.1
43,404 - GFF6908 0.76 +0.5
43,404 - GFF6908 0.76 -0.8
43,404 - GFF6908 0.76 +0.5
43,404 - GFF6908 0.76 -1.1
43,404 - GFF6908 0.76 +0.1
43,404 - GFF6908 0.76 -0.2
43,861 + GFF6909 0.20 +0.2
44,143 + GFF6909 0.40 +0.4
44,143 + GFF6909 0.40 -1.1
44,143 + GFF6909 0.40 -0.5
44,143 + GFF6909 0.40 -0.1
44,143 + GFF6909 0.40 -1.1
44,144 - GFF6909 0.40 -1.3
44,144 - GFF6909 0.40 +0.0
44,144 - GFF6909 0.40 -0.4
44,144 - GFF6909 0.40 -0.8
44,144 - GFF6909 0.40 -0.6
44,144 - GFF6909 0.40 -0.1
44,144 - GFF6909 0.40 -0.9
44,144 - GFF6909 0.40 -0.4
44,144 - GFF6909 0.40 -0.3
44,144 - GFF6909 0.40 +1.1

Or see this region's nucleotide sequence