Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6789 and GFF6790 are separated by 77 nucleotides GFF6790 and GFF6791 are separated by 40 nucleotides GFF6791 and GFF6792 overlap by 4 nucleotides GFF6792 and GFF6793 overlap by 4 nucleotides GFF6793 and GFF6794 are separated by 264 nucleotides
GFF6789 - Copper tolerance protein, at 38,084 to 39,556
GFF6789
GFF6790 - no description, at 39,634 to 40,065
GFF6790
GFF6791 - FIG00538730: hypothetical protein, at 40,106 to 40,393
GFF6791
GFF6792 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 40,390 to 41,394
GFF6792
GFF6793 - hypothetical protein, at 41,391 to 41,933
GFF6793
GFF6794 - hypothetical protein, at 42,198 to 43,739
GFF6794
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1 at 39.576 kb on + strand at 39.576 kb on + strand at 39.576 kb on + strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.620 kb on + strand at 39.621 kb on - strand at 39.621 kb on - strand at 39.621 kb on - strand at 40.078 kb on + strand at 40.078 kb on + strand at 40.079 kb on - strand at 40.079 kb on - strand at 40.107 kb on + strand at 40.107 kb on + strand at 40.107 kb on + strand at 40.107 kb on + strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.595 kb on + strand, within GFF6792 at 40.595 kb on + strand, within GFF6792 at 40.595 kb on + strand, within GFF6792 at 40.596 kb on - strand, within GFF6792 at 40.730 kb on + strand, within GFF6792 at 40.730 kb on + strand, within GFF6792 at 40.730 kb on + strand, within GFF6792 at 40.731 kb on - strand, within GFF6792 at 40.731 kb on - strand, within GFF6792 at 41.024 kb on + strand, within GFF6792 at 41.025 kb on - strand, within GFF6792 at 41.025 kb on - strand, within GFF6792 at 41.025 kb on - strand, within GFF6792 at 41.057 kb on + strand, within GFF6792 at 41.057 kb on + strand, within GFF6792 at 41.057 kb on + strand, within GFF6792 at 41.057 kb on + strand, within GFF6792 at 41.057 kb on + strand, within GFF6792 at 41.057 kb on + strand, within GFF6792 at 41.057 kb on + strand, within GFF6792 at 41.058 kb on - strand, within GFF6792 at 41.446 kb on + strand, within GFF6793 at 41.446 kb on + strand, within GFF6793 at 41.446 kb on + strand, within GFF6793 at 41.446 kb on + strand, within GFF6793 at 41.446 kb on + strand, within GFF6793 at 41.447 kb on - strand, within GFF6793 at 41.447 kb on - strand, within GFF6793 at 41.447 kb on - strand, within GFF6793 at 41.633 kb on - strand, within GFF6793 at 41.633 kb on - strand, within GFF6793 at 41.633 kb on - strand, within GFF6793 at 41.851 kb on + strand, within GFF6793 at 41.852 kb on - strand, within GFF6793 at 41.852 kb on - strand, within GFF6793 at 41.852 kb on - strand, within GFF6793 at 41.852 kb on - strand, within GFF6793 at 41.975 kb on + strand at 41.975 kb on + strand at 41.975 kb on + strand at 41.975 kb on + strand at 41.975 kb on + strand at 41.975 kb on + strand at 41.975 kb on + strand at 41.975 kb on + strand at 41.975 kb on + strand at 41.976 kb on - strand at 41.976 kb on - strand at 41.976 kb on - strand at 41.976 kb on - strand at 42.027 kb on + strand at 42.027 kb on + strand at 42.028 kb on - strand at 42.028 kb on - strand at 42.028 kb on - strand at 42.028 kb on - strand at 42.028 kb on - strand at 42.062 kb on + strand at 42.063 kb on - strand at 42.079 kb on + strand at 42.079 kb on + strand at 42.079 kb on + strand at 42.079 kb on + strand at 42.080 kb on - strand at 42.080 kb on - strand at 42.080 kb on - strand at 42.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 39,576 + +1.1 39,576 + -0.1 39,576 + +0.1 39,577 - +1.1 39,577 - -0.4 39,577 - -0.3 39,577 - -0.2 39,577 - +0.1 39,620 + -0.7 39,621 - -0.5 39,621 - -0.6 39,621 - -0.5 40,078 + +0.4 40,078 + -0.3 40,079 - -0.4 40,079 - -0.4 40,107 + -0.4 40,107 + +0.3 40,107 + -0.7 40,107 + -0.2 40,108 - +0.5 40,108 - -0.6 40,108 - -0.8 40,108 - -0.4 40,108 - +0.5 40,108 - -0.1 40,108 - +0.2 40,595 + GFF6792 0.20 +0.1 40,595 + GFF6792 0.20 -0.8 40,595 + GFF6792 0.20 +0.0 40,596 - GFF6792 0.20 +0.2 40,730 + GFF6792 0.34 +0.2 40,730 + GFF6792 0.34 +0.8 40,730 + GFF6792 0.34 -0.7 40,731 - GFF6792 0.34 -1.5 40,731 - GFF6792 0.34 -0.1 41,024 + GFF6792 0.63 -0.1 41,025 - GFF6792 0.63 +0.8 41,025 - GFF6792 0.63 +0.7 41,025 - GFF6792 0.63 -0.4 41,057 + GFF6792 0.66 -0.8 41,057 + GFF6792 0.66 +0.4 41,057 + GFF6792 0.66 -1.1 41,057 + GFF6792 0.66 +0.5 41,057 + GFF6792 0.66 +0.3 41,057 + GFF6792 0.66 -0.7 41,057 + GFF6792 0.66 +0.7 41,058 - GFF6792 0.66 -0.3 41,446 + GFF6793 0.10 -0.1 41,446 + GFF6793 0.10 +0.9 41,446 + GFF6793 0.10 -0.1 41,446 + GFF6793 0.10 +0.3 41,446 + GFF6793 0.10 -0.2 41,447 - GFF6793 0.10 -1.3 41,447 - GFF6793 0.10 +0.5 41,447 - GFF6793 0.10 -0.0 41,633 - GFF6793 0.45 -1.5 41,633 - GFF6793 0.45 +0.1 41,633 - GFF6793 0.45 -0.0 41,851 + GFF6793 0.85 +0.3 41,852 - GFF6793 0.85 -0.6 41,852 - GFF6793 0.85 +0.2 41,852 - GFF6793 0.85 -0.3 41,852 - GFF6793 0.85 +0.1 41,975 + +0.1 41,975 + +0.6 41,975 + -0.5 41,975 + -0.4 41,975 + +1.5 41,975 + +0.6 41,975 + +1.5 41,975 + -0.5 41,975 + +0.4 41,976 - -0.5 41,976 - -0.5 41,976 - -0.8 41,976 - -0.3 42,027 + +0.6 42,027 + -0.7 42,028 - -0.2 42,028 - -0.0 42,028 - +0.1 42,028 - -0.0 42,028 - -0.1 42,062 + -1.5 42,063 - +0.2 42,079 + +1.3 42,079 + +0.7 42,079 + +0.5 42,079 + +0.0 42,080 - -0.3 42,080 - -0.3 42,080 - -0.4 42,080 - -0.2
Or see this region's nucleotide sequence