Strain Fitness in Variovorax sp. SCN45 around GFF6722

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6721 and GFF6722 are separated by 139 nucleotidesGFF6722 and GFF6723 are separated by 3 nucleotides GFF6721 - Transcriptional regulator, LysR family, at 30,551 to 31,486 GFF6721 GFF6722 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 31,626 to 32,522 GFF6722 GFF6723 - Cysteine desulfurase (EC 2.8.1.7), at 32,526 to 33,821 GFF6723 Position (kb) 31 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1at 30.690 kb on + strand, within GFF6721at 30.690 kb on + strand, within GFF6721at 30.690 kb on + strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.777 kb on + strand, within GFF6721at 30.777 kb on + strand, within GFF6721at 30.777 kb on + strand, within GFF6721at 30.778 kb on - strand, within GFF6721at 30.882 kb on + strand, within GFF6721at 30.882 kb on + strand, within GFF6721at 31.130 kb on + strand, within GFF6721at 31.131 kb on - strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.459 kb on - strandat 31.518 kb on - strandat 31.776 kb on + strand, within GFF6722at 31.776 kb on + strand, within GFF6722at 31.885 kb on - strand, within GFF6722at 32.220 kb on + strand, within GFF6722at 32.221 kb on - strand, within GFF6722at 32.221 kb on - strand, within GFF6722at 32.280 kb on + strand, within GFF6722at 32.280 kb on + strand, within GFF6722at 32.412 kb on + strand, within GFF6722at 32.412 kb on + strand, within GFF6722at 32.412 kb on + strand, within GFF6722at 32.412 kb on + strand, within GFF6722at 32.413 kb on - strand, within GFF6722at 32.493 kb on + strandat 32.493 kb on + strandat 32.646 kb on + strandat 32.646 kb on + strandat 32.647 kb on - strandat 32.827 kb on - strand, within GFF6723at 32.827 kb on - strand, within GFF6723at 32.827 kb on - strand, within GFF6723at 32.827 kb on - strand, within GFF6723at 33.072 kb on + strand, within GFF6723at 33.072 kb on + strand, within GFF6723at 33.072 kb on + strand, within GFF6723at 33.073 kb on - strand, within GFF6723at 33.150 kb on + strand, within GFF6723at 33.150 kb on + strand, within GFF6723at 33.150 kb on + strand, within GFF6723at 33.150 kb on + strand, within GFF6723at 33.150 kb on + strand, within GFF6723at 33.150 kb on + strand, within GFF6723at 33.150 kb on + strand, within GFF6723at 33.151 kb on - strand, within GFF6723at 33.151 kb on - strand, within GFF6723at 33.151 kb on - strand, within GFF6723at 33.151 kb on - strand, within GFF6723at 33.151 kb on - strand, within GFF6723at 33.151 kb on - strand, within GFF6723at 33.237 kb on + strand, within GFF6723at 33.393 kb on + strand, within GFF6723at 33.394 kb on - strand, within GFF6723

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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30,690 + GFF6721 0.15 -0.5
30,690 + GFF6721 0.15 +0.6
30,690 + GFF6721 0.15 -0.2
30,691 - GFF6721 0.15 +0.2
30,691 - GFF6721 0.15 -0.6
30,691 - GFF6721 0.15 -0.1
30,691 - GFF6721 0.15 -1.2
30,691 - GFF6721 0.15 -0.1
30,777 + GFF6721 0.24 +0.2
30,777 + GFF6721 0.24 -0.3
30,777 + GFF6721 0.24 -0.3
30,778 - GFF6721 0.24 -0.3
30,882 + GFF6721 0.35 +0.0
30,882 + GFF6721 0.35 -0.1
31,130 + GFF6721 0.62 +0.0
31,131 - GFF6721 0.62 +0.4
31,293 + GFF6721 0.79 -0.7
31,293 + GFF6721 0.79 +1.2
31,293 + GFF6721 0.79 -0.3
31,293 + GFF6721 0.79 -0.0
31,293 + GFF6721 0.79 -0.9
31,293 + GFF6721 0.79 +0.2
31,293 + GFF6721 0.79 +0.9
31,293 + GFF6721 0.79 -0.3
31,293 + GFF6721 0.79 -0.3
31,293 + GFF6721 0.79 -0.1
31,293 + GFF6721 0.79 -0.3
31,293 + GFF6721 0.79 +0.0
31,294 - GFF6721 0.79 +0.0
31,294 - GFF6721 0.79 -0.2
31,294 - GFF6721 0.79 -0.8
31,294 - GFF6721 0.79 -0.1
31,294 - GFF6721 0.79 -1.2
31,294 - GFF6721 0.79 -0.4
31,294 - GFF6721 0.79 -0.2
31,294 - GFF6721 0.79 -1.5
31,294 - GFF6721 0.79 -0.2
31,294 - GFF6721 0.79 -1.5
31,294 - GFF6721 0.79 +0.2
31,294 - GFF6721 0.79 -0.7
31,294 - GFF6721 0.79 +0.3
31,294 - GFF6721 0.79 -2.1
31,294 - GFF6721 0.79 +0.1
31,294 - GFF6721 0.79 +0.6
31,294 - GFF6721 0.79 -1.4
31,459 - -0.6
31,518 - +0.5
31,776 + GFF6722 0.17 -0.2
31,776 + GFF6722 0.17 -0.6
31,885 - GFF6722 0.29 -0.7
32,220 + GFF6722 0.66 -0.7
32,221 - GFF6722 0.66 +0.1
32,221 - GFF6722 0.66 -0.9
32,280 + GFF6722 0.73 -0.1
32,280 + GFF6722 0.73 -0.8
32,412 + GFF6722 0.88 -0.2
32,412 + GFF6722 0.88 +0.0
32,412 + GFF6722 0.88 -0.4
32,412 + GFF6722 0.88 -1.0
32,413 - GFF6722 0.88 +0.6
32,493 + +1.0
32,493 + +0.5
32,646 + +1.2
32,646 + -0.6
32,647 - +0.0
32,827 - GFF6723 0.23 -0.5
32,827 - GFF6723 0.23 -2.8
32,827 - GFF6723 0.23 +0.6
32,827 - GFF6723 0.23 -0.1
33,072 + GFF6723 0.42 -0.5
33,072 + GFF6723 0.42 -0.2
33,072 + GFF6723 0.42 -0.4
33,073 - GFF6723 0.42 +0.8
33,150 + GFF6723 0.48 -1.0
33,150 + GFF6723 0.48 -0.1
33,150 + GFF6723 0.48 +0.5
33,150 + GFF6723 0.48 -0.3
33,150 + GFF6723 0.48 +0.6
33,150 + GFF6723 0.48 -0.1
33,150 + GFF6723 0.48 +0.2
33,151 - GFF6723 0.48 -0.4
33,151 - GFF6723 0.48 -0.7
33,151 - GFF6723 0.48 -0.6
33,151 - GFF6723 0.48 -0.0
33,151 - GFF6723 0.48 +1.6
33,151 - GFF6723 0.48 -0.5
33,237 + GFF6723 0.55 -0.4
33,393 + GFF6723 0.67 -0.7
33,394 - GFF6723 0.67 -0.2

Or see this region's nucleotide sequence