Strain Fitness in Variovorax sp. SCN45 around GFF6682

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6681 and GFF6682 are separated by 48 nucleotidesGFF6682 and GFF6683 are separated by 9 nucleotides GFF6681 - TonB-dependent siderophore receptor, at 56,599 to 58,779 GFF6681 GFF6682 - Efflux ABC transporter, permease protein, at 58,828 to 60,321 GFF6682 GFF6683 - Efflux ABC transporter, permease protein, at 60,331 to 61,743 GFF6683 Position (kb) 58 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 57.884 kb on + strand, within GFF6681at 57.884 kb on + strand, within GFF6681at 57.884 kb on + strand, within GFF6681at 57.884 kb on + strand, within GFF6681at 57.884 kb on + strand, within GFF6681at 57.885 kb on - strand, within GFF6681at 57.885 kb on - strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.920 kb on + strand, within GFF6681at 57.921 kb on - strand, within GFF6681at 57.921 kb on - strand, within GFF6681at 57.921 kb on - strand, within GFF6681at 57.921 kb on - strand, within GFF6681at 57.921 kb on - strand, within GFF6681at 57.921 kb on - strand, within GFF6681at 57.921 kb on - strand, within GFF6681at 57.921 kb on - strand, within GFF6681at 57.921 kb on - strand, within GFF6681at 58.026 kb on - strand, within GFF6681at 58.049 kb on + strand, within GFF6681at 58.049 kb on + strand, within GFF6681at 58.050 kb on - strand, within GFF6681at 58.169 kb on + strand, within GFF6681at 58.170 kb on - strand, within GFF6681at 58.170 kb on - strand, within GFF6681at 58.181 kb on + strand, within GFF6681at 58.238 kb on + strand, within GFF6681at 58.238 kb on + strand, within GFF6681at 58.238 kb on + strand, within GFF6681at 58.239 kb on - strand, within GFF6681at 58.376 kb on + strand, within GFF6681at 58.376 kb on + strand, within GFF6681at 58.376 kb on + strand, within GFF6681at 58.376 kb on + strand, within GFF6681at 58.376 kb on + strand, within GFF6681at 58.377 kb on - strand, within GFF6681at 58.377 kb on - strand, within GFF6681at 58.436 kb on + strand, within GFF6681at 58.436 kb on + strand, within GFF6681at 58.436 kb on + strand, within GFF6681at 58.436 kb on + strand, within GFF6681at 58.437 kb on - strand, within GFF6681at 58.437 kb on - strand, within GFF6681at 58.442 kb on + strand, within GFF6681at 58.442 kb on + strand, within GFF6681at 58.442 kb on + strand, within GFF6681at 58.442 kb on + strand, within GFF6681at 58.442 kb on + strand, within GFF6681at 58.442 kb on + strand, within GFF6681at 58.442 kb on + strand, within GFF6681at 58.442 kb on + strand, within GFF6681at 58.442 kb on + strand, within GFF6681at 58.443 kb on - strand, within GFF6681at 58.443 kb on - strand, within GFF6681at 58.443 kb on - strand, within GFF6681at 58.443 kb on - strand, within GFF6681at 58.443 kb on - strand, within GFF6681at 58.443 kb on - strand, within GFF6681at 58.443 kb on - strand, within GFF6681at 58.696 kb on + strandat 58.696 kb on + strandat 58.696 kb on + strandat 58.696 kb on + strandat 58.697 kb on - strandat 58.697 kb on - strandat 58.697 kb on - strandat 58.697 kb on - strandat 58.697 kb on - strandat 58.829 kb on + strandat 59.045 kb on + strand, within GFF6682at 59.046 kb on - strand, within GFF6682at 59.046 kb on - strand, within GFF6682at 59.046 kb on - strand, within GFF6682at 59.046 kb on - strand, within GFF6682at 59.046 kb on - strand, within GFF6682at 59.118 kb on - strand, within GFF6682at 59.240 kb on + strand, within GFF6682at 59.240 kb on + strand, within GFF6682at 59.240 kb on + strand, within GFF6682at 59.240 kb on + strand, within GFF6682at 59.240 kb on + strand, within GFF6682at 59.240 kb on + strand, within GFF6682at 59.240 kb on + strand, within GFF6682at 59.241 kb on - strand, within GFF6682at 59.241 kb on - strand, within GFF6682at 59.241 kb on - strand, within GFF6682at 59.319 kb on - strand, within GFF6682at 59.556 kb on - strand, within GFF6682at 59.556 kb on - strand, within GFF6682at 59.789 kb on + strand, within GFF6682at 59.789 kb on + strand, within GFF6682at 59.789 kb on + strand, within GFF6682at 59.790 kb on - strand, within GFF6682at 59.790 kb on - strand, within GFF6682at 59.790 kb on - strand, within GFF6682at 59.790 kb on - strand, within GFF6682at 59.823 kb on - strand, within GFF6682at 59.823 kb on - strand, within GFF6682at 59.823 kb on - strand, within GFF6682at 60.188 kb on + strandat 60.188 kb on + strandat 60.188 kb on + strandat 60.188 kb on + strandat 60.189 kb on - strandat 60.189 kb on - strandat 60.189 kb on - strandat 60.455 kb on + strandat 60.455 kb on + strandat 60.500 kb on + strand, within GFF6683at 60.500 kb on + strand, within GFF6683at 60.731 kb on + strand, within GFF6683at 60.743 kb on + strand, within GFF6683at 60.744 kb on - strand, within GFF6683at 60.752 kb on + strand, within GFF6683at 61.061 kb on + strand, within GFF6683at 61.061 kb on + strand, within GFF6683at 61.061 kb on + strand, within GFF6683at 61.061 kb on + strand, within GFF6683at 61.062 kb on - strand, within GFF6683at 61.062 kb on - strand, within GFF6683at 61.070 kb on + strand, within GFF6683

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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57,884 + GFF6681 0.59 +0.2
57,884 + GFF6681 0.59 -0.3
57,884 + GFF6681 0.59 -1.6
57,884 + GFF6681 0.59 -0.2
57,884 + GFF6681 0.59 +0.3
57,885 - GFF6681 0.59 -1.2
57,885 - GFF6681 0.59 -0.7
57,920 + GFF6681 0.61 +1.4
57,920 + GFF6681 0.61 +0.2
57,920 + GFF6681 0.61 -0.3
57,920 + GFF6681 0.61 +0.9
57,920 + GFF6681 0.61 -0.6
57,920 + GFF6681 0.61 +1.4
57,920 + GFF6681 0.61 -0.1
57,920 + GFF6681 0.61 -0.5
57,920 + GFF6681 0.61 +0.7
57,920 + GFF6681 0.61 -0.5
57,920 + GFF6681 0.61 -0.7
57,921 - GFF6681 0.61 -2.3
57,921 - GFF6681 0.61 +0.2
57,921 - GFF6681 0.61 -2.6
57,921 - GFF6681 0.61 -0.2
57,921 - GFF6681 0.61 +0.8
57,921 - GFF6681 0.61 -0.5
57,921 - GFF6681 0.61 -0.6
57,921 - GFF6681 0.61 +0.7
57,921 - GFF6681 0.61 +0.2
58,026 - GFF6681 0.65 +1.0
58,049 + GFF6681 0.66 -0.2
58,049 + GFF6681 0.66 +0.5
58,050 - GFF6681 0.67 -1.2
58,169 + GFF6681 0.72 -0.2
58,170 - GFF6681 0.72 +0.2
58,170 - GFF6681 0.72 +0.3
58,181 + GFF6681 0.73 -1.1
58,238 + GFF6681 0.75 +0.3
58,238 + GFF6681 0.75 -0.1
58,238 + GFF6681 0.75 +0.5
58,239 - GFF6681 0.75 +0.5
58,376 + GFF6681 0.81 +0.1
58,376 + GFF6681 0.81 +1.1
58,376 + GFF6681 0.81 +0.4
58,376 + GFF6681 0.81 +0.1
58,376 + GFF6681 0.81 -0.5
58,377 - GFF6681 0.82 -0.3
58,377 - GFF6681 0.82 +0.8
58,436 + GFF6681 0.84 -0.5
58,436 + GFF6681 0.84 +0.1
58,436 + GFF6681 0.84 -1.4
58,436 + GFF6681 0.84 -0.2
58,437 - GFF6681 0.84 -0.4
58,437 - GFF6681 0.84 -0.2
58,442 + GFF6681 0.85 -0.7
58,442 + GFF6681 0.85 -0.0
58,442 + GFF6681 0.85 +0.5
58,442 + GFF6681 0.85 -0.4
58,442 + GFF6681 0.85 -0.8
58,442 + GFF6681 0.85 +0.3
58,442 + GFF6681 0.85 -0.7
58,442 + GFF6681 0.85 +1.4
58,442 + GFF6681 0.85 -0.7
58,443 - GFF6681 0.85 -1.1
58,443 - GFF6681 0.85 +0.2
58,443 - GFF6681 0.85 -0.2
58,443 - GFF6681 0.85 +1.4
58,443 - GFF6681 0.85 +0.9
58,443 - GFF6681 0.85 -0.8
58,443 - GFF6681 0.85 +0.3
58,696 + -0.5
58,696 + -0.3
58,696 + -0.0
58,696 + +0.4
58,697 - +0.4
58,697 - +0.6
58,697 - +0.1
58,697 - +0.3
58,697 - +0.1
58,829 + -1.2
59,045 + GFF6682 0.15 -0.2
59,046 - GFF6682 0.15 +0.7
59,046 - GFF6682 0.15 -0.0
59,046 - GFF6682 0.15 +0.5
59,046 - GFF6682 0.15 +0.4
59,046 - GFF6682 0.15 +0.2
59,118 - GFF6682 0.19 -1.9
59,240 + GFF6682 0.28 -0.3
59,240 + GFF6682 0.28 +0.0
59,240 + GFF6682 0.28 -0.6
59,240 + GFF6682 0.28 +0.0
59,240 + GFF6682 0.28 +0.8
59,240 + GFF6682 0.28 -1.4
59,240 + GFF6682 0.28 +0.1
59,241 - GFF6682 0.28 +0.3
59,241 - GFF6682 0.28 -0.1
59,241 - GFF6682 0.28 -0.3
59,319 - GFF6682 0.33 -1.6
59,556 - GFF6682 0.49 -1.4
59,556 - GFF6682 0.49 +0.6
59,789 + GFF6682 0.64 -0.2
59,789 + GFF6682 0.64 +2.0
59,789 + GFF6682 0.64 +0.7
59,790 - GFF6682 0.64 -1.1
59,790 - GFF6682 0.64 +0.8
59,790 - GFF6682 0.64 +0.6
59,790 - GFF6682 0.64 -0.2
59,823 - GFF6682 0.67 +0.9
59,823 - GFF6682 0.67 -0.1
59,823 - GFF6682 0.67 -0.3
60,188 + -0.6
60,188 + -0.6
60,188 + +0.4
60,188 + -0.3
60,189 - +0.0
60,189 - -0.3
60,189 - +0.1
60,455 + -0.5
60,455 + -0.0
60,500 + GFF6683 0.12 -0.3
60,500 + GFF6683 0.12 +0.8
60,731 + GFF6683 0.28 -0.7
60,743 + GFF6683 0.29 -0.8
60,744 - GFF6683 0.29 -0.0
60,752 + GFF6683 0.30 -0.2
61,061 + GFF6683 0.52 +0.2
61,061 + GFF6683 0.52 -0.2
61,061 + GFF6683 0.52 +1.4
61,061 + GFF6683 0.52 -0.4
61,062 - GFF6683 0.52 +0.3
61,062 - GFF6683 0.52 -0.3
61,070 + GFF6683 0.52 -0.7

Or see this region's nucleotide sequence