Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6641 and GFF6642 are separated by 13 nucleotides GFF6642 and GFF6643 are separated by 4 nucleotides GFF6643 and GFF6644 are separated by 103 nucleotides
GFF6641 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 14,442 to 15,314
GFF6641
GFF6642 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 15,328 to 16,269
GFF6642
GFF6643 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 16,274 to 17,884
GFF6643
GFF6644 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 17,988 to 19,457
GFF6644
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.332 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.770 kb on + strand, within GFF6642 at 15.771 kb on - strand, within GFF6642 at 15.812 kb on + strand, within GFF6642 at 15.812 kb on + strand, within GFF6642 at 15.812 kb on + strand, within GFF6642 at 15.813 kb on + strand, within GFF6642 at 15.813 kb on - strand, within GFF6642 at 15.813 kb on - strand, within GFF6642 at 15.824 kb on + strand, within GFF6642 at 15.825 kb on - strand, within GFF6642 at 16.275 kb on + strand at 16.275 kb on + strand at 16.275 kb on + strand at 16.275 kb on + strand at 16.275 kb on + strand at 16.296 kb on + strand at 16.296 kb on + strand at 16.296 kb on + strand at 16.296 kb on + strand at 16.296 kb on + strand at 16.297 kb on - strand at 16.359 kb on + strand at 16.360 kb on - strand at 16.360 kb on - strand at 16.360 kb on - strand at 16.767 kb on + strand, within GFF6643 at 16.768 kb on - strand, within GFF6643 at 16.768 kb on - strand, within GFF6643 at 16.821 kb on + strand, within GFF6643 at 16.821 kb on + strand, within GFF6643 at 16.821 kb on + strand, within GFF6643 at 16.821 kb on + strand, within GFF6643 at 16.822 kb on - strand, within GFF6643 at 16.822 kb on - strand, within GFF6643 at 17.067 kb on + strand, within GFF6643 at 17.068 kb on - strand, within GFF6643 at 17.068 kb on - strand, within GFF6643 at 17.068 kb on - strand, within GFF6643 at 17.068 kb on - strand, within GFF6643 at 17.172 kb on + strand, within GFF6643 at 17.172 kb on + strand, within GFF6643 at 17.173 kb on - strand, within GFF6643 at 17.173 kb on - strand, within GFF6643 at 17.173 kb on - strand, within GFF6643 at 17.173 kb on - strand, within GFF6643 at 17.173 kb on - strand, within GFF6643 at 17.223 kb on + strand, within GFF6643 at 17.223 kb on + strand, within GFF6643 at 17.223 kb on + strand, within GFF6643 at 17.223 kb on + strand, within GFF6643 at 17.223 kb on + strand, within GFF6643 at 17.224 kb on - strand, within GFF6643 at 17.224 kb on - strand, within GFF6643 at 17.286 kb on + strand, within GFF6643 at 17.286 kb on + strand, within GFF6643 at 17.286 kb on + strand, within GFF6643 at 17.286 kb on + strand, within GFF6643 at 17.286 kb on + strand, within GFF6643 at 17.287 kb on - strand, within GFF6643 at 17.287 kb on - strand, within GFF6643 at 17.287 kb on - strand, within GFF6643 at 17.287 kb on - strand, within GFF6643 at 17.287 kb on - strand, within GFF6643 at 17.676 kb on + strand, within GFF6643 at 17.676 kb on + strand, within GFF6643 at 17.676 kb on + strand, within GFF6643 at 17.676 kb on + strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.685 kb on + strand, within GFF6643 at 17.685 kb on + strand, within GFF6643 at 17.685 kb on + strand, within GFF6643 at 17.685 kb on + strand, within GFF6643 at 17.685 kb on + strand, within GFF6643 at 17.686 kb on - strand, within GFF6643 at 17.686 kb on - strand, within GFF6643 at 17.686 kb on - strand, within GFF6643 at 17.686 kb on - strand, within GFF6643 at 17.686 kb on - strand, within GFF6643 at 17.706 kb on + strand, within GFF6643 at 17.706 kb on + strand, within GFF6643 at 17.707 kb on - strand, within GFF6643 at 17.707 kb on - strand, within GFF6643 at 17.707 kb on - strand, within GFF6643 at 17.707 kb on - strand, within GFF6643 at 17.707 kb on - strand, within GFF6643 at 17.941 kb on - strand at 17.941 kb on - strand at 17.942 kb on + strand at 17.943 kb on - strand at 17.945 kb on - strand at 17.965 kb on + strand at 17.966 kb on - strand at 18.091 kb on - strand at 18.261 kb on + strand, within GFF6644 at 18.261 kb on + strand, within GFF6644 at 18.261 kb on + strand, within GFF6644 at 18.261 kb on + strand, within GFF6644 at 18.261 kb on + strand, within GFF6644 at 18.262 kb on - strand, within GFF6644 at 18.262 kb on - strand, within GFF6644 at 18.262 kb on - strand, within GFF6644 at 18.262 kb on - strand, within GFF6644 at 18.262 kb on - strand, within GFF6644 at 18.351 kb on + strand, within GFF6644 at 18.351 kb on + strand, within GFF6644 at 18.351 kb on + strand, within GFF6644 at 18.351 kb on + strand, within GFF6644 at 18.351 kb on + strand, within GFF6644 at 18.352 kb on - strand, within GFF6644 at 18.352 kb on - strand, within GFF6644 at 18.413 kb on + strand, within GFF6644 at 18.413 kb on + strand, within GFF6644 at 18.413 kb on + strand, within GFF6644 at 18.414 kb on - strand, within GFF6644 at 18.414 kb on - strand, within GFF6644 at 18.477 kb on + strand, within GFF6644 at 18.478 kb on - strand, within GFF6644 at 18.478 kb on - strand, within GFF6644 at 18.478 kb on - strand, within GFF6644 at 18.495 kb on + strand, within GFF6644 at 18.495 kb on + strand, within GFF6644 at 18.495 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.545 kb on - strand, within GFF6644 at 18.545 kb on - strand, within GFF6644 at 18.669 kb on + strand, within GFF6644 at 18.669 kb on + strand, within GFF6644 at 18.840 kb on + strand, within GFF6644 at 18.841 kb on - strand, within GFF6644
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 15,332 + -0.3 15,359 + +0.2 15,359 + -2.3 15,359 + -1.0 15,359 + +1.8 15,359 + +1.4 15,359 + -0.3 15,359 + -0.6 15,360 - -0.3 15,360 - +2.4 15,360 - -1.2 15,360 - -0.2 15,360 - -0.8 15,360 - -0.2 15,360 - -0.2 15,360 - -0.6 15,392 + -0.4 15,392 + -2.4 15,392 + +2.7 15,392 + -0.8 15,392 + +1.0 15,392 + +0.7 15,392 + -2.2 15,392 + -0.4 15,393 - +0.4 15,393 - -0.0 15,393 - +0.8 15,393 - -1.0 15,393 - -0.1 15,393 - -0.8 15,695 + GFF6642 0.39 +0.4 15,695 + GFF6642 0.39 -0.9 15,695 + GFF6642 0.39 +0.4 15,695 + GFF6642 0.39 -0.5 15,695 + GFF6642 0.39 -0.2 15,695 + GFF6642 0.39 +0.3 15,695 + GFF6642 0.39 -0.6 15,695 + GFF6642 0.39 -0.6 15,695 + GFF6642 0.39 -2.0 15,695 + GFF6642 0.39 -0.2 15,696 - GFF6642 0.39 -0.8 15,696 - GFF6642 0.39 -0.9 15,696 - GFF6642 0.39 -0.7 15,696 - GFF6642 0.39 -0.6 15,696 - GFF6642 0.39 -1.8 15,696 - GFF6642 0.39 -0.2 15,696 - GFF6642 0.39 -0.8 15,770 + GFF6642 0.47 -0.8 15,771 - GFF6642 0.47 +0.5 15,812 + GFF6642 0.51 -0.7 15,812 + GFF6642 0.51 -0.2 15,812 + GFF6642 0.51 +0.4 15,813 + GFF6642 0.51 -1.5 15,813 - GFF6642 0.51 +0.4 15,813 - GFF6642 0.51 -0.9 15,824 + GFF6642 0.53 -0.3 15,825 - GFF6642 0.53 -0.2 16,275 + -0.2 16,275 + +0.2 16,275 + +0.2 16,275 + -0.4 16,275 + -0.2 16,296 + +0.8 16,296 + -0.3 16,296 + -0.5 16,296 + -0.4 16,296 + -1.2 16,297 - +0.8 16,359 + +0.2 16,360 - -0.6 16,360 - -0.2 16,360 - -0.5 16,767 + GFF6643 0.31 -0.4 16,768 - GFF6643 0.31 -0.6 16,768 - GFF6643 0.31 -0.7 16,821 + GFF6643 0.34 -0.6 16,821 + GFF6643 0.34 +0.4 16,821 + GFF6643 0.34 -2.0 16,821 + GFF6643 0.34 -0.0 16,822 - GFF6643 0.34 -0.6 16,822 - GFF6643 0.34 -1.0 17,067 + GFF6643 0.49 -0.0 17,068 - GFF6643 0.49 -0.5 17,068 - GFF6643 0.49 -0.5 17,068 - GFF6643 0.49 -0.6 17,068 - GFF6643 0.49 +1.7 17,172 + GFF6643 0.56 -1.8 17,172 + GFF6643 0.56 +1.4 17,173 - GFF6643 0.56 -1.8 17,173 - GFF6643 0.56 -1.5 17,173 - GFF6643 0.56 -0.8 17,173 - GFF6643 0.56 -1.0 17,173 - GFF6643 0.56 -1.1 17,223 + GFF6643 0.59 -0.2 17,223 + GFF6643 0.59 +0.1 17,223 + GFF6643 0.59 -1.2 17,223 + GFF6643 0.59 +0.7 17,223 + GFF6643 0.59 +0.8 17,224 - GFF6643 0.59 +0.9 17,224 - GFF6643 0.59 +1.4 17,286 + GFF6643 0.63 +0.2 17,286 + GFF6643 0.63 -0.4 17,286 + GFF6643 0.63 -0.2 17,286 + GFF6643 0.63 +0.1 17,286 + GFF6643 0.63 -1.2 17,287 - GFF6643 0.63 -0.6 17,287 - GFF6643 0.63 -0.8 17,287 - GFF6643 0.63 -1.0 17,287 - GFF6643 0.63 +0.3 17,287 - GFF6643 0.63 -0.4 17,676 + GFF6643 0.87 -0.8 17,676 + GFF6643 0.87 -1.5 17,676 + GFF6643 0.87 -0.6 17,676 + GFF6643 0.87 +0.3 17,677 - GFF6643 0.87 +0.8 17,677 - GFF6643 0.87 -0.2 17,677 - GFF6643 0.87 -0.7 17,677 - GFF6643 0.87 -0.3 17,677 - GFF6643 0.87 -0.8 17,677 - GFF6643 0.87 +0.2 17,677 - GFF6643 0.87 -0.4 17,685 + GFF6643 0.88 +0.5 17,685 + GFF6643 0.88 +0.3 17,685 + GFF6643 0.88 -0.2 17,685 + GFF6643 0.88 +0.3 17,685 + GFF6643 0.88 -0.6 17,686 - GFF6643 0.88 -0.4 17,686 - GFF6643 0.88 +0.1 17,686 - GFF6643 0.88 -2.0 17,686 - GFF6643 0.88 -0.9 17,686 - GFF6643 0.88 +0.3 17,706 + GFF6643 0.89 -0.1 17,706 + GFF6643 0.89 +0.3 17,707 - GFF6643 0.89 -1.6 17,707 - GFF6643 0.89 -1.6 17,707 - GFF6643 0.89 -0.4 17,707 - GFF6643 0.89 -0.1 17,707 - GFF6643 0.89 -0.6 17,941 - +0.6 17,941 - -0.5 17,942 + +1.4 17,943 - +0.8 17,945 - +1.4 17,965 + -0.6 17,966 - +0.4 18,091 - -0.5 18,261 + GFF6644 0.19 -0.1 18,261 + GFF6644 0.19 +1.4 18,261 + GFF6644 0.19 +0.5 18,261 + GFF6644 0.19 -0.5 18,261 + GFF6644 0.19 -0.6 18,262 - GFF6644 0.19 -0.0 18,262 - GFF6644 0.19 -0.0 18,262 - GFF6644 0.19 -0.6 18,262 - GFF6644 0.19 -0.5 18,262 - GFF6644 0.19 -0.9 18,351 + GFF6644 0.25 -0.3 18,351 + GFF6644 0.25 +0.4 18,351 + GFF6644 0.25 -0.1 18,351 + GFF6644 0.25 +0.0 18,351 + GFF6644 0.25 -0.9 18,352 - GFF6644 0.25 -0.3 18,352 - GFF6644 0.25 -0.7 18,413 + GFF6644 0.29 -0.2 18,413 + GFF6644 0.29 -0.7 18,413 + GFF6644 0.29 +0.9 18,414 - GFF6644 0.29 -0.9 18,414 - GFF6644 0.29 +0.9 18,477 + GFF6644 0.33 +0.2 18,478 - GFF6644 0.33 -1.0 18,478 - GFF6644 0.33 +0.3 18,478 - GFF6644 0.33 -0.8 18,495 + GFF6644 0.34 +0.6 18,495 + GFF6644 0.34 -0.6 18,495 + GFF6644 0.34 -0.3 18,517 + GFF6644 0.36 +0.3 18,517 + GFF6644 0.36 -0.2 18,517 + GFF6644 0.36 -0.6 18,517 + GFF6644 0.36 -0.5 18,517 + GFF6644 0.36 +0.8 18,517 + GFF6644 0.36 +0.1 18,518 - GFF6644 0.36 +0.2 18,518 - GFF6644 0.36 -0.5 18,518 - GFF6644 0.36 -0.6 18,518 - GFF6644 0.36 +1.4 18,518 - GFF6644 0.36 +0.7 18,518 - GFF6644 0.36 -0.4 18,544 + GFF6644 0.38 +0.1 18,544 + GFF6644 0.38 -1.0 18,544 + GFF6644 0.38 +0.2 18,544 + GFF6644 0.38 +0.2 18,544 + GFF6644 0.38 -0.6 18,544 + GFF6644 0.38 -0.6 18,544 + GFF6644 0.38 -0.6 18,545 - GFF6644 0.38 +0.1 18,545 - GFF6644 0.38 -0.8 18,669 + GFF6644 0.46 -1.2 18,669 + GFF6644 0.46 -2.0 18,840 + GFF6644 0.58 -0.7 18,841 - GFF6644 0.58 -0.6
Or see this region's nucleotide sequence