Strain Fitness in Variovorax sp. SCN45 around GFF661

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF660 and GFF661 are separated by 163 nucleotidesGFF661 and GFF662 are separated by 744 nucleotides GFF660 - FIG00974024: hypothetical protein, at 713,556 to 714,377 GFF660 GFF661 - no description, at 714,541 to 714,855 GFF661 GFF662 - no description, at 715,600 to 715,866 GFF662 Position (kb) 714 715Strain fitness (log2 ratio) -2 -1 0 1 2 3at 713.596 kb on + strandat 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.650 kb on - strand, within GFF660at 713.650 kb on - strand, within GFF660at 713.650 kb on - strand, within GFF660at 713.650 kb on - strand, within GFF660at 713.650 kb on - strand, within GFF660at 713.694 kb on + strand, within GFF660at 713.694 kb on + strand, within GFF660at 713.694 kb on + strand, within GFF660at 713.694 kb on + strand, within GFF660at 713.694 kb on + strand, within GFF660at 713.695 kb on - strand, within GFF660at 713.695 kb on - strand, within GFF660at 713.695 kb on - strand, within GFF660at 713.802 kb on + strand, within GFF660at 713.802 kb on + strand, within GFF660at 713.802 kb on + strand, within GFF660at 713.802 kb on + strand, within GFF660at 713.803 kb on - strand, within GFF660at 713.803 kb on - strand, within GFF660at 713.803 kb on - strand, within GFF660at 713.866 kb on - strand, within GFF660at 713.866 kb on - strand, within GFF660at 713.866 kb on - strand, within GFF660at 713.866 kb on - strand, within GFF660at 713.866 kb on - strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.875 kb on - strand, within GFF660at 713.875 kb on - strand, within GFF660at 713.875 kb on - strand, within GFF660at 713.875 kb on - strand, within GFF660at 713.875 kb on - strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.956 kb on - strand, within GFF660at 713.956 kb on - strand, within GFF660at 713.956 kb on - strand, within GFF660at 713.956 kb on - strand, within GFF660at 713.956 kb on - strand, within GFF660at 713.956 kb on - strand, within GFF660at 714.039 kb on + strand, within GFF660at 714.039 kb on + strand, within GFF660at 714.039 kb on + strand, within GFF660at 714.039 kb on + strand, within GFF660at 714.039 kb on + strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.051 kb on + strand, within GFF660at 714.051 kb on + strand, within GFF660at 714.052 kb on - strand, within GFF660at 714.052 kb on - strand, within GFF660at 714.052 kb on - strand, within GFF660at 714.052 kb on - strand, within GFF660at 714.213 kb on + strand, within GFF660at 714.213 kb on + strand, within GFF660at 714.213 kb on + strand, within GFF660at 714.213 kb on + strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.398 kb on - strandat 714.440 kb on + strandat 714.441 kb on - strandat 714.441 kb on - strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.463 kb on + strandat 714.498 kb on - strandat 714.498 kb on - strandat 714.498 kb on - strandat 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.608 kb on + strand, within GFF661at 714.609 kb on - strand, within GFF661at 714.609 kb on - strand, within GFF661at 714.765 kb on - strand, within GFF661at 714.765 kb on - strand, within GFF661at 714.911 kb on + strandat 714.945 kb on + strandat 715.039 kb on + strandat 715.039 kb on + strandat 715.040 kb on - strandat 715.051 kb on + strandat 715.052 kb on - strandat 715.054 kb on + strandat 715.063 kb on + strandat 715.147 kb on + strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.173 kb on + strandat 715.174 kb on - strandat 715.255 kb on + strandat 715.609 kb on + strandat 715.609 kb on + strandat 715.610 kb on - strandat 715.610 kb on - strandat 715.610 kb on - strandat 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.724 kb on - strand, within GFF662at 715.724 kb on - strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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713,596 + -0.3
713,649 + GFF660 0.11 -0.1
713,649 + GFF660 0.11 -0.6
713,649 + GFF660 0.11 +0.4
713,649 + GFF660 0.11 +1.1
713,649 + GFF660 0.11 +0.2
713,649 + GFF660 0.11 -1.4
713,649 + GFF660 0.11 -0.6
713,649 + GFF660 0.11 -0.4
713,650 - GFF660 0.11 +1.3
713,650 - GFF660 0.11 +0.1
713,650 - GFF660 0.11 +0.1
713,650 - GFF660 0.11 +1.1
713,650 - GFF660 0.11 +0.1
713,694 + GFF660 0.17 -0.2
713,694 + GFF660 0.17 -1.0
713,694 + GFF660 0.17 +0.9
713,694 + GFF660 0.17 +0.3
713,694 + GFF660 0.17 +1.1
713,695 - GFF660 0.17 +1.3
713,695 - GFF660 0.17 -1.0
713,695 - GFF660 0.17 -0.4
713,802 + GFF660 0.30 -0.4
713,802 + GFF660 0.30 -0.3
713,802 + GFF660 0.30 -0.3
713,802 + GFF660 0.30 +0.1
713,803 - GFF660 0.30 -0.5
713,803 - GFF660 0.30 -0.9
713,803 - GFF660 0.30 -0.8
713,866 - GFF660 0.38 +0.9
713,866 - GFF660 0.38 -0.5
713,866 - GFF660 0.38 -1.7
713,866 - GFF660 0.38 -0.9
713,866 - GFF660 0.38 +0.3
713,874 + GFF660 0.39 +0.1
713,874 + GFF660 0.39 +0.5
713,874 + GFF660 0.39 -1.1
713,874 + GFF660 0.39 -0.3
713,874 + GFF660 0.39 -0.1
713,874 + GFF660 0.39 -0.5
713,875 - GFF660 0.39 -0.3
713,875 - GFF660 0.39 +0.3
713,875 - GFF660 0.39 -0.8
713,875 - GFF660 0.39 -0.3
713,875 - GFF660 0.39 -0.7
713,955 + GFF660 0.49 -0.8
713,955 + GFF660 0.49 -1.7
713,955 + GFF660 0.49 -0.6
713,955 + GFF660 0.49 -0.4
713,955 + GFF660 0.49 -0.3
713,955 + GFF660 0.49 -1.1
713,956 - GFF660 0.49 -0.4
713,956 - GFF660 0.49 -0.3
713,956 - GFF660 0.49 +0.2
713,956 - GFF660 0.49 +0.8
713,956 - GFF660 0.49 -0.1
713,956 - GFF660 0.49 +0.2
714,039 + GFF660 0.59 -0.3
714,039 + GFF660 0.59 -0.7
714,039 + GFF660 0.59 -0.0
714,039 + GFF660 0.59 -0.7
714,039 + GFF660 0.59 -0.4
714,040 - GFF660 0.59 +1.9
714,040 - GFF660 0.59 -0.3
714,040 - GFF660 0.59 -1.3
714,040 - GFF660 0.59 +0.4
714,040 - GFF660 0.59 -0.4
714,040 - GFF660 0.59 -0.5
714,040 - GFF660 0.59 +0.5
714,051 + GFF660 0.60 +0.7
714,051 + GFF660 0.60 +0.4
714,052 - GFF660 0.60 -0.1
714,052 - GFF660 0.60 +0.5
714,052 - GFF660 0.60 -0.1
714,052 - GFF660 0.60 +1.6
714,213 + GFF660 0.80 -1.1
714,213 + GFF660 0.80 -0.7
714,213 + GFF660 0.80 +0.0
714,213 + GFF660 0.80 -0.2
714,214 - GFF660 0.80 +0.6
714,214 - GFF660 0.80 +0.3
714,214 - GFF660 0.80 -0.8
714,214 - GFF660 0.80 +0.3
714,214 - GFF660 0.80 -0.3
714,214 - GFF660 0.80 -0.5
714,214 - GFF660 0.80 +0.1
714,214 - GFF660 0.80 +0.5
714,398 - -0.2
714,440 + +0.1
714,441 - +1.0
714,441 - -0.7
714,443 + -0.1
714,443 + -0.4
714,443 + -0.4
714,443 + -1.1
714,443 + -0.5
714,443 + -0.2
714,443 + -0.7
714,443 + -0.5
714,443 + -0.7
714,443 + -1.9
714,443 + -0.7
714,443 + -0.5
714,443 + -0.4
714,443 + -0.7
714,443 + -1.6
714,444 - -0.3
714,444 - +0.3
714,444 - -0.4
714,444 - -0.4
714,444 - -0.7
714,444 - +0.1
714,444 - +0.6
714,444 - -0.9
714,444 - -0.7
714,444 - -0.7
714,463 + -0.4
714,498 - -0.5
714,498 - +0.7
714,498 - -0.0
714,574 + GFF661 0.10 +0.2
714,574 + GFF661 0.10 -0.5
714,574 + GFF661 0.10 -0.2
714,574 + GFF661 0.10 -0.7
714,574 + GFF661 0.10 +1.3
714,574 + GFF661 0.10 -0.6
714,574 + GFF661 0.10 -1.5
714,575 - GFF661 0.11 -0.8
714,575 - GFF661 0.11 -0.2
714,575 - GFF661 0.11 +0.5
714,575 - GFF661 0.11 -1.5
714,575 - GFF661 0.11 -0.6
714,575 - GFF661 0.11 -0.6
714,575 - GFF661 0.11 -1.2
714,608 + GFF661 0.21 -0.0
714,609 - GFF661 0.22 -0.5
714,609 - GFF661 0.22 -0.1
714,765 - GFF661 0.71 +1.0
714,765 - GFF661 0.71 -0.4
714,911 + -0.4
714,945 + -1.0
715,039 + +0.0
715,039 + +0.2
715,040 - -0.7
715,051 + +0.3
715,052 - +0.8
715,054 + -0.3
715,063 + -0.7
715,147 + -1.1
715,148 - -0.5
715,148 - -0.4
715,148 - -0.3
715,148 - +0.3
715,148 - -0.4
715,173 + -0.4
715,174 - +1.1
715,255 + -0.2
715,609 + +0.3
715,609 + -0.1
715,610 - -1.7
715,610 - -0.5
715,610 - +0.6
715,630 + GFF662 0.11 -1.0
715,630 + GFF662 0.11 +1.0
715,630 + GFF662 0.11 +0.1
715,630 + GFF662 0.11 -0.2
715,630 + GFF662 0.11 -1.3
715,630 + GFF662 0.11 -1.6
715,630 + GFF662 0.11 -0.3
715,630 + GFF662 0.11 -0.5
715,630 + GFF662 0.11 -0.6
715,630 + GFF662 0.11 -0.3
715,630 + GFF662 0.11 -0.5
715,630 + GFF662 0.11 +0.3
715,630 + GFF662 0.11 -0.5
715,630 + GFF662 0.11 -0.5
715,630 + GFF662 0.11 +0.2
715,630 + GFF662 0.11 -1.1
715,630 + GFF662 0.11 +0.1
715,630 + GFF662 0.11 -1.2
715,630 + GFF662 0.11 +0.9
715,630 + GFF662 0.11 +0.4
715,630 + GFF662 0.11 -0.5
715,630 + GFF662 0.11 -0.0
715,630 + GFF662 0.11 -0.1
715,631 - GFF662 0.12 +0.1
715,631 - GFF662 0.12 -0.3
715,631 - GFF662 0.12 -0.0
715,631 - GFF662 0.12 +0.2
715,631 - GFF662 0.12 -1.3
715,631 - GFF662 0.12 +0.1
715,631 - GFF662 0.12 -0.6
715,631 - GFF662 0.12 +0.3
715,631 - GFF662 0.12 -0.1
715,631 - GFF662 0.12 +0.2
715,631 - GFF662 0.12 -0.6
715,631 - GFF662 0.12 -0.1
715,631 - GFF662 0.12 +0.2
715,631 - GFF662 0.12 -1.3
715,631 - GFF662 0.12 -0.3
715,723 + GFF662 0.46 -0.5
715,723 + GFF662 0.46 -0.3
715,723 + GFF662 0.46 +0.3
715,723 + GFF662 0.46 +0.2
715,723 + GFF662 0.46 -0.3
715,724 - GFF662 0.46 +0.1
715,724 - GFF662 0.46 +0.7
715,786 + GFF662 0.70 +0.2
715,786 + GFF662 0.70 -0.0
715,786 + GFF662 0.70 +0.2
715,786 + GFF662 0.70 +0.3
715,786 + GFF662 0.70 -0.0
715,786 + GFF662 0.70 +1.3
715,786 + GFF662 0.70 -0.7
715,786 + GFF662 0.70 -0.5
715,787 - GFF662 0.70 +3.6
715,787 - GFF662 0.70 +0.2
715,787 - GFF662 0.70 -0.7
715,787 - GFF662 0.70 -0.6
715,787 - GFF662 0.70 -0.5
715,787 - GFF662 0.70 -1.7
715,787 - GFF662 0.70 -0.0
715,787 - GFF662 0.70 -0.7
715,787 - GFF662 0.70 -1.0
715,787 - GFF662 0.70 -0.2
715,787 - GFF662 0.70 +0.8
715,787 - GFF662 0.70 -0.8

Or see this region's nucleotide sequence