Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6558 and GFF6559 are separated by 94 nucleotides GFF6559 and GFF6560 are separated by 196 nucleotides GFF6560 and GFF6561 are separated by 386 nucleotides GFF6561 and GFF6562 are separated by 380 nucleotides
GFF6558 - 5'-nucleotidase (EC 3.1.3.5), at 53,883 to 55,712
GFF6558
GFF6559 - hypothetical protein, at 55,807 to 56,280
GFF6559
GFF6560 - no description, at 56,477 to 56,686
GFF6560
GFF6561 - no description, at 57,073 to 57,267
GFF6561
GFF6562 - T1SS secreted agglutinin RTX, at 57,648 to 77,981
GFF6562
Position (kb) 56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 55.957 kb on + strand, within GFF6559 at 55.957 kb on + strand, within GFF6559 at 56.265 kb on + strand at 56.265 kb on + strand at 56.300 kb on + strand at 56.300 kb on + strand at 56.300 kb on + strand at 56.300 kb on + strand at 56.300 kb on + strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.358 kb on + strand at 56.359 kb on - strand at 56.359 kb on - strand at 56.389 kb on + strand at 56.389 kb on + strand at 56.389 kb on + strand at 56.389 kb on + strand at 56.389 kb on + strand at 56.389 kb on + strand at 56.390 kb on - strand at 56.436 kb on + strand at 56.436 kb on + strand at 56.436 kb on + strand at 56.436 kb on + strand at 56.437 kb on - strand at 56.437 kb on - strand at 56.437 kb on - strand at 56.437 kb on - strand at 56.437 kb on - strand at 56.459 kb on - strand at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.514 kb on - strand, within GFF6560 at 56.514 kb on - strand, within GFF6560 at 56.514 kb on - strand, within GFF6560 at 56.514 kb on - strand, within GFF6560 at 56.611 kb on + strand, within GFF6560 at 56.646 kb on - strand, within GFF6560 at 56.654 kb on + strand, within GFF6560 at 56.655 kb on - strand, within GFF6560 at 56.655 kb on - strand, within GFF6560 at 56.655 kb on - strand, within GFF6560 at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.699 kb on + strand at 56.699 kb on + strand at 56.699 kb on + strand at 56.699 kb on + strand at 56.699 kb on + strand at 56.699 kb on + strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.922 kb on + strand at 56.922 kb on + strand at 56.923 kb on - strand at 56.923 kb on - strand at 56.923 kb on - strand at 56.923 kb on - strand at 56.923 kb on - strand at 56.938 kb on - strand at 56.970 kb on + strand at 57.022 kb on + strand at 57.023 kb on - strand at 57.046 kb on - strand at 57.124 kb on - strand, within GFF6561 at 57.185 kb on - strand, within GFF6561 at 57.260 kb on + strand at 57.260 kb on + strand at 57.261 kb on - strand at 57.268 kb on + strand at 57.268 kb on + strand at 57.269 kb on - strand at 57.379 kb on + strand at 57.379 kb on + strand at 57.379 kb on + strand at 57.379 kb on + strand at 57.380 kb on - strand at 57.380 kb on - strand at 57.387 kb on + strand at 57.395 kb on + strand at 57.395 kb on + strand at 57.396 kb on - strand at 57.396 kb on - strand at 57.665 kb on - strand at 57.665 kb on - strand at 57.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 55,957 + GFF6559 0.32 +0.8 55,957 + GFF6559 0.32 -0.2 56,265 + -0.4 56,265 + -0.4 56,300 + -0.7 56,300 + -0.3 56,300 + -0.1 56,300 + -0.4 56,300 + -0.3 56,301 - -0.4 56,301 - -0.5 56,301 - -0.0 56,301 - -0.4 56,301 - +0.0 56,301 - -0.1 56,301 - -1.1 56,301 - -0.6 56,358 + +0.2 56,359 - -1.0 56,359 - -0.3 56,389 + -0.2 56,389 + -1.0 56,389 + -0.0 56,389 + -0.2 56,389 + -0.0 56,389 + +1.0 56,390 - -0.5 56,436 + +0.8 56,436 + -0.3 56,436 + +0.7 56,436 + +0.1 56,437 - -0.1 56,437 - +0.0 56,437 - +0.3 56,437 - -0.2 56,437 - -0.9 56,459 - +0.4 56,513 + GFF6560 0.17 +1.5 56,513 + GFF6560 0.17 +0.4 56,513 + GFF6560 0.17 +1.1 56,513 + GFF6560 0.17 +1.5 56,513 + GFF6560 0.17 -0.4 56,513 + GFF6560 0.17 +0.5 56,513 + GFF6560 0.17 -0.4 56,514 - GFF6560 0.18 -1.1 56,514 - GFF6560 0.18 -0.2 56,514 - GFF6560 0.18 +0.7 56,514 - GFF6560 0.18 -1.0 56,611 + GFF6560 0.64 +0.7 56,646 - GFF6560 0.80 +0.3 56,654 + GFF6560 0.84 -0.0 56,655 - GFF6560 0.85 -0.2 56,655 - GFF6560 0.85 +0.1 56,655 - GFF6560 0.85 +0.4 56,689 + -1.2 56,689 + -0.4 56,689 + -2.3 56,689 + -0.3 56,689 + -0.2 56,689 + -0.6 56,689 + +1.0 56,689 + +0.2 56,689 + -0.2 56,689 + +0.2 56,689 + +0.4 56,689 + -0.3 56,690 - -2.2 56,690 - -0.0 56,690 - +0.4 56,690 - +0.0 56,690 - +0.1 56,690 - +0.5 56,690 - -0.4 56,690 - +0.1 56,690 - -1.4 56,690 - +0.0 56,690 - +0.2 56,690 - +0.1 56,690 - -0.3 56,690 - -0.0 56,690 - -0.2 56,695 + +0.2 56,695 + -0.0 56,695 + -0.3 56,695 + +0.0 56,695 + +0.4 56,695 + +0.5 56,695 + -0.8 56,695 + -0.6 56,695 + -0.8 56,695 + -0.5 56,695 + +1.5 56,695 + -0.7 56,695 + -0.4 56,695 + -0.3 56,695 + -0.9 56,695 + -0.0 56,695 + -0.9 56,696 - +0.2 56,696 - -0.6 56,696 - -1.0 56,696 - -0.6 56,696 - -0.4 56,696 - +0.3 56,696 - -0.7 56,696 - -0.3 56,696 - -0.0 56,696 - +0.0 56,696 - +0.5 56,696 - -0.3 56,696 - -0.0 56,696 - -0.5 56,696 - -0.4 56,696 - -0.5 56,696 - -1.8 56,696 - -0.2 56,696 - -0.0 56,696 - -1.0 56,696 - -0.8 56,696 - -0.4 56,699 + +0.7 56,699 + -0.6 56,699 + -0.5 56,699 + -0.8 56,699 + -0.6 56,699 + +0.1 56,700 - +0.5 56,700 - +0.2 56,700 - -0.5 56,700 - +0.2 56,700 - -0.4 56,700 - +1.0 56,700 - +0.3 56,700 - -0.1 56,922 + -0.5 56,922 + +0.3 56,923 - -0.3 56,923 - -0.9 56,923 - -0.6 56,923 - -1.1 56,923 - +1.2 56,938 - +0.1 56,970 + -0.5 57,022 + +0.8 57,023 - -1.6 57,046 - +0.1 57,124 - GFF6561 0.26 +0.7 57,185 - GFF6561 0.57 +0.0 57,260 + -0.3 57,260 + +0.2 57,261 - +2.0 57,268 + -0.3 57,268 + +0.2 57,269 - +0.7 57,379 + -0.3 57,379 + -0.6 57,379 + -0.1 57,379 + -0.9 57,380 - -0.7 57,380 - -0.0 57,387 + +0.7 57,395 + -0.1 57,395 + -0.4 57,396 - -0.4 57,396 - +0.3 57,665 - -1.0 57,665 - -0.1 57,665 - -0.5
Or see this region's nucleotide sequence