Strain Fitness in Variovorax sp. SCN45 around GFF6544

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6543 and GFF6544 are separated by 90 nucleotidesGFF6544 and GFF6545 are separated by 10 nucleotides GFF6543 - Transcriptional regulator, LysR family, at 40,159 to 41,133 GFF6543 GFF6544 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 41,224 to 42,630 GFF6544 GFF6545 - Uncharacterized MFS-type transporter, at 42,641 to 43,960 GFF6545 Position (kb) 41 42 43Strain fitness (log2 ratio) -1 0 1at 40.448 kb on + strand, within GFF6543at 40.934 kb on + strand, within GFF6543at 40.934 kb on + strand, within GFF6543at 40.935 kb on - strand, within GFF6543at 40.941 kb on - strand, within GFF6543at 41.140 kb on - strandat 41.187 kb on - strandat 41.330 kb on + strandat 41.330 kb on + strandat 41.330 kb on + strandat 41.330 kb on + strandat 41.331 kb on - strandat 41.331 kb on - strandat 41.331 kb on - strandat 41.633 kb on + strand, within GFF6544at 41.633 kb on + strand, within GFF6544at 41.633 kb on + strand, within GFF6544at 41.633 kb on + strand, within GFF6544at 41.634 kb on - strand, within GFF6544at 41.948 kb on + strand, within GFF6544at 41.948 kb on + strand, within GFF6544at 41.948 kb on + strand, within GFF6544at 41.948 kb on + strand, within GFF6544at 41.949 kb on - strand, within GFF6544at 41.949 kb on - strand, within GFF6544at 41.949 kb on - strand, within GFF6544at 41.949 kb on - strand, within GFF6544at 41.949 kb on - strand, within GFF6544at 42.020 kb on + strand, within GFF6544at 42.021 kb on - strand, within GFF6544at 42.038 kb on + strand, within GFF6544at 42.038 kb on + strand, within GFF6544at 42.039 kb on - strand, within GFF6544at 42.039 kb on - strand, within GFF6544at 42.039 kb on - strand, within GFF6544at 42.039 kb on - strand, within GFF6544at 42.039 kb on - strand, within GFF6544at 42.720 kb on + strandat 42.720 kb on + strandat 42.720 kb on + strandat 42.720 kb on + strandat 42.721 kb on + strandat 42.721 kb on - strandat 42.721 kb on - strandat 42.721 kb on - strandat 42.721 kb on - strandat 42.721 kb on - strandat 42.721 kb on - strandat 43.044 kb on + strand, within GFF6545at 43.045 kb on - strand, within GFF6545at 43.045 kb on - strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.169 kb on - strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.179 kb on + strand, within GFF6545at 43.179 kb on + strand, within GFF6545at 43.179 kb on + strand, within GFF6545at 43.180 kb on - strand, within GFF6545at 43.180 kb on - strand, within GFF6545at 43.333 kb on - strand, within GFF6545at 43.530 kb on + strand, within GFF6545at 43.531 kb on - strand, within GFF6545at 43.531 kb on - strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on - strand, within GFF6545at 43.540 kb on - strand, within GFF6545at 43.540 kb on - strand, within GFF6545at 43.540 kb on - strand, within GFF6545at 43.599 kb on + strand, within GFF6545at 43.599 kb on + strand, within GFF6545at 43.600 kb on - strand, within GFF6545at 43.600 kb on - strand, within GFF6545

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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40,448 + GFF6543 0.30 -0.1
40,934 + GFF6543 0.79 +0.3
40,934 + GFF6543 0.79 -0.9
40,935 - GFF6543 0.80 -0.6
40,941 - GFF6543 0.80 +0.5
41,140 - +0.4
41,187 - -0.0
41,330 + -0.3
41,330 + -0.2
41,330 + +0.1
41,330 + -0.9
41,331 - -0.4
41,331 - +0.7
41,331 - -0.5
41,633 + GFF6544 0.29 +0.5
41,633 + GFF6544 0.29 +1.5
41,633 + GFF6544 0.29 +1.0
41,633 + GFF6544 0.29 -1.0
41,634 - GFF6544 0.29 +1.3
41,948 + GFF6544 0.51 -1.0
41,948 + GFF6544 0.51 -1.4
41,948 + GFF6544 0.51 +0.5
41,948 + GFF6544 0.51 -0.8
41,949 - GFF6544 0.52 -0.8
41,949 - GFF6544 0.52 +0.9
41,949 - GFF6544 0.52 +0.2
41,949 - GFF6544 0.52 +0.6
41,949 - GFF6544 0.52 +1.5
42,020 + GFF6544 0.57 +0.3
42,021 - GFF6544 0.57 -0.5
42,038 + GFF6544 0.58 -0.3
42,038 + GFF6544 0.58 +1.0
42,039 - GFF6544 0.58 +0.7
42,039 - GFF6544 0.58 -0.6
42,039 - GFF6544 0.58 +0.2
42,039 - GFF6544 0.58 +1.5
42,039 - GFF6544 0.58 +0.5
42,720 + +0.3
42,720 + -0.3
42,720 + +0.5
42,720 + -0.6
42,721 + +1.2
42,721 - +0.2
42,721 - -0.1
42,721 - +0.2
42,721 - -0.8
42,721 - +1.3
42,721 - -0.5
43,044 + GFF6545 0.31 -0.3
43,045 - GFF6545 0.31 -0.9
43,045 - GFF6545 0.31 +0.5
43,168 + GFF6545 0.40 -0.8
43,168 + GFF6545 0.40 +0.1
43,168 + GFF6545 0.40 -0.0
43,168 + GFF6545 0.40 -0.2
43,168 + GFF6545 0.40 +0.5
43,168 + GFF6545 0.40 +1.0
43,169 - GFF6545 0.40 +0.5
43,170 + GFF6545 0.40 -0.8
43,170 + GFF6545 0.40 -0.5
43,170 + GFF6545 0.40 -0.5
43,170 + GFF6545 0.40 -0.6
43,179 + GFF6545 0.41 -1.4
43,179 + GFF6545 0.41 -0.7
43,179 + GFF6545 0.41 -0.5
43,180 - GFF6545 0.41 +0.2
43,180 - GFF6545 0.41 -0.3
43,333 - GFF6545 0.52 +0.2
43,530 + GFF6545 0.67 +0.4
43,531 - GFF6545 0.67 -0.8
43,531 - GFF6545 0.67 -0.8
43,539 + GFF6545 0.68 -0.3
43,539 + GFF6545 0.68 +1.0
43,539 + GFF6545 0.68 +0.4
43,539 + GFF6545 0.68 -0.0
43,539 + GFF6545 0.68 -0.7
43,539 + GFF6545 0.68 -0.6
43,539 + GFF6545 0.68 -0.4
43,539 - GFF6545 0.68 -0.2
43,540 - GFF6545 0.68 -0.7
43,540 - GFF6545 0.68 -0.3
43,540 - GFF6545 0.68 +0.1
43,599 + GFF6545 0.73 +0.8
43,599 + GFF6545 0.73 -0.3
43,600 - GFF6545 0.73 -0.5
43,600 - GFF6545 0.73 +1.5

Or see this region's nucleotide sequence