Strain Fitness in Variovorax sp. SCN45 around GFF6540

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6539 and GFF6540 are separated by 4 nucleotidesGFF6540 and GFF6541 are separated by 26 nucleotides GFF6539 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 35,741 to 37,291 GFF6539 GFF6540 - FIG00994002: hypothetical protein, at 37,296 to 38,432 GFF6540 GFF6541 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 38,459 to 39,262 GFF6541 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1at 36.465 kb on + strand, within GFF6539at 36.466 kb on - strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.693 kb on + strand, within GFF6539at 36.694 kb on - strand, within GFF6539at 36.717 kb on + strand, within GFF6539at 36.969 kb on + strand, within GFF6539at 37.061 kb on + strand, within GFF6539at 37.061 kb on + strand, within GFF6539at 37.062 kb on - strand, within GFF6539at 37.062 kb on - strand, within GFF6539at 37.062 kb on - strand, within GFF6539at 37.438 kb on + strand, within GFF6540at 37.439 kb on - strand, within GFF6540at 37.439 kb on - strand, within GFF6540at 37.465 kb on + strand, within GFF6540at 37.465 kb on + strand, within GFF6540at 37.465 kb on + strand, within GFF6540at 37.465 kb on + strand, within GFF6540at 37.465 kb on + strand, within GFF6540at 37.609 kb on + strand, within GFF6540at 37.817 kb on - strand, within GFF6540at 37.846 kb on + strand, within GFF6540at 37.867 kb on + strand, within GFF6540at 37.867 kb on + strand, within GFF6540at 37.867 kb on + strand, within GFF6540at 37.868 kb on - strand, within GFF6540at 38.008 kb on + strand, within GFF6540at 38.008 kb on + strand, within GFF6540at 38.008 kb on + strand, within GFF6540at 38.008 kb on + strand, within GFF6540at 38.008 kb on + strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.116 kb on + strand, within GFF6540at 38.116 kb on + strand, within GFF6540at 38.117 kb on - strand, within GFF6540at 38.117 kb on - strand, within GFF6540at 38.257 kb on + strand, within GFF6540at 38.258 kb on - strand, within GFF6540at 38.347 kb on + strandat 38.688 kb on + strand, within GFF6541at 39.280 kb on + strandat 39.281 kb on - strandat 39.307 kb on + strandat 39.410 kb on + strandat 39.411 kb on - strandat 39.411 kb on - strandat 39.411 kb on - strandat 39.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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36,465 + GFF6539 0.47 -0.5
36,466 - GFF6539 0.47 -2.3
36,528 + GFF6539 0.51 +0.0
36,528 + GFF6539 0.51 -0.2
36,528 + GFF6539 0.51 -0.2
36,528 + GFF6539 0.51 -1.5
36,528 + GFF6539 0.51 -0.8
36,528 + GFF6539 0.51 +0.7
36,528 + GFF6539 0.51 -0.4
36,528 + GFF6539 0.51 +0.2
36,528 + GFF6539 0.51 -0.5
36,528 + GFF6539 0.51 -0.8
36,528 + GFF6539 0.51 -0.8
36,528 + GFF6539 0.51 -0.5
36,529 - GFF6539 0.51 -0.3
36,529 - GFF6539 0.51 -1.2
36,529 - GFF6539 0.51 -0.8
36,529 - GFF6539 0.51 +1.1
36,693 + GFF6539 0.61 +1.1
36,694 - GFF6539 0.61 -0.3
36,717 + GFF6539 0.63 +0.1
36,969 + GFF6539 0.79 -0.9
37,061 + GFF6539 0.85 +0.2
37,061 + GFF6539 0.85 +0.0
37,062 - GFF6539 0.85 -1.9
37,062 - GFF6539 0.85 -0.8
37,062 - GFF6539 0.85 -0.5
37,438 + GFF6540 0.12 +1.0
37,439 - GFF6540 0.13 -0.9
37,439 - GFF6540 0.13 +1.1
37,465 + GFF6540 0.15 +1.2
37,465 + GFF6540 0.15 -0.2
37,465 + GFF6540 0.15 -0.0
37,465 + GFF6540 0.15 +0.3
37,465 + GFF6540 0.15 -0.8
37,609 + GFF6540 0.28 -0.5
37,817 - GFF6540 0.46 -1.4
37,846 + GFF6540 0.48 +0.4
37,867 + GFF6540 0.50 +1.0
37,867 + GFF6540 0.50 -0.7
37,867 + GFF6540 0.50 -0.3
37,868 - GFF6540 0.50 +1.4
38,008 + GFF6540 0.63 -0.4
38,008 + GFF6540 0.63 +0.5
38,008 + GFF6540 0.63 +0.1
38,008 + GFF6540 0.63 +0.1
38,008 + GFF6540 0.63 -0.5
38,009 - GFF6540 0.63 -0.9
38,009 - GFF6540 0.63 -0.2
38,009 - GFF6540 0.63 -1.0
38,009 - GFF6540 0.63 +0.5
38,009 - GFF6540 0.63 +0.5
38,009 - GFF6540 0.63 -0.3
38,116 + GFF6540 0.72 -0.0
38,116 + GFF6540 0.72 +0.4
38,117 - GFF6540 0.72 +0.2
38,117 - GFF6540 0.72 +0.3
38,257 + GFF6540 0.85 +0.4
38,258 - GFF6540 0.85 -0.3
38,347 + -0.7
38,688 + GFF6541 0.28 -1.0
39,280 + +0.7
39,281 - -0.5
39,307 + +0.4
39,410 + -0.9
39,411 - +0.0
39,411 - +1.0
39,411 - +1.5
39,432 + -0.2

Or see this region's nucleotide sequence