Strain Fitness in Variovorax sp. SCN45 around GFF6539

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6538 and GFF6539 overlap by 13 nucleotidesGFF6539 and GFF6540 are separated by 4 nucleotides GFF6538 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 34,125 to 35,753 GFF6538 GFF6539 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 35,741 to 37,291 GFF6539 GFF6540 - FIG00994002: hypothetical protein, at 37,296 to 38,432 GFF6540 Position (kb) 35 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2at 34.983 kb on + strand, within GFF6538at 34.984 kb on - strand, within GFF6538at 34.984 kb on - strand, within GFF6538at 35.049 kb on + strand, within GFF6538at 35.050 kb on - strand, within GFF6538at 35.050 kb on - strand, within GFF6538at 35.050 kb on - strand, within GFF6538at 35.142 kb on + strand, within GFF6538at 35.142 kb on + strand, within GFF6538at 35.142 kb on + strand, within GFF6538at 35.197 kb on - strand, within GFF6538at 35.313 kb on + strand, within GFF6538at 35.313 kb on + strand, within GFF6538at 35.314 kb on - strand, within GFF6538at 35.316 kb on + strand, within GFF6538at 35.316 kb on + strand, within GFF6538at 35.317 kb on - strand, within GFF6538at 35.317 kb on - strand, within GFF6538at 35.479 kb on + strand, within GFF6538at 35.479 kb on + strand, within GFF6538at 35.480 kb on - strand, within GFF6538at 35.740 kb on - strandat 36.087 kb on + strand, within GFF6539at 36.087 kb on + strand, within GFF6539at 36.087 kb on + strand, within GFF6539at 36.088 kb on - strand, within GFF6539at 36.088 kb on - strand, within GFF6539at 36.088 kb on - strand, within GFF6539at 36.111 kb on + strand, within GFF6539at 36.177 kb on + strand, within GFF6539at 36.178 kb on - strand, within GFF6539at 36.178 kb on - strand, within GFF6539at 36.178 kb on - strand, within GFF6539at 36.180 kb on + strand, within GFF6539at 36.465 kb on + strand, within GFF6539at 36.466 kb on - strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.693 kb on + strand, within GFF6539at 36.694 kb on - strand, within GFF6539at 36.717 kb on + strand, within GFF6539at 36.969 kb on + strand, within GFF6539at 37.061 kb on + strand, within GFF6539at 37.061 kb on + strand, within GFF6539at 37.062 kb on - strand, within GFF6539at 37.062 kb on - strand, within GFF6539at 37.062 kb on - strand, within GFF6539at 37.438 kb on + strand, within GFF6540at 37.439 kb on - strand, within GFF6540at 37.439 kb on - strand, within GFF6540at 37.465 kb on + strand, within GFF6540at 37.465 kb on + strand, within GFF6540at 37.465 kb on + strand, within GFF6540at 37.465 kb on + strand, within GFF6540at 37.465 kb on + strand, within GFF6540at 37.609 kb on + strand, within GFF6540at 37.817 kb on - strand, within GFF6540at 37.846 kb on + strand, within GFF6540at 37.867 kb on + strand, within GFF6540at 37.867 kb on + strand, within GFF6540at 37.867 kb on + strand, within GFF6540at 37.868 kb on - strand, within GFF6540at 38.008 kb on + strand, within GFF6540at 38.008 kb on + strand, within GFF6540at 38.008 kb on + strand, within GFF6540at 38.008 kb on + strand, within GFF6540at 38.008 kb on + strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.009 kb on - strand, within GFF6540at 38.116 kb on + strand, within GFF6540at 38.116 kb on + strand, within GFF6540at 38.117 kb on - strand, within GFF6540at 38.117 kb on - strand, within GFF6540at 38.257 kb on + strand, within GFF6540at 38.258 kb on - strand, within GFF6540

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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34,983 + GFF6538 0.53 -1.1
34,984 - GFF6538 0.53 +0.0
34,984 - GFF6538 0.53 -0.1
35,049 + GFF6538 0.57 -0.5
35,050 - GFF6538 0.57 +0.4
35,050 - GFF6538 0.57 +0.5
35,050 - GFF6538 0.57 -1.5
35,142 + GFF6538 0.62 -0.2
35,142 + GFF6538 0.62 -0.1
35,142 + GFF6538 0.62 -0.2
35,197 - GFF6538 0.66 -0.6
35,313 + GFF6538 0.73 -0.6
35,313 + GFF6538 0.73 -0.5
35,314 - GFF6538 0.73 +0.2
35,316 + GFF6538 0.73 -0.6
35,316 + GFF6538 0.73 -0.4
35,317 - GFF6538 0.73 +0.4
35,317 - GFF6538 0.73 -0.6
35,479 + GFF6538 0.83 -0.5
35,479 + GFF6538 0.83 +0.5
35,480 - GFF6538 0.83 -0.2
35,740 - -0.5
36,087 + GFF6539 0.22 -1.8
36,087 + GFF6539 0.22 -0.1
36,087 + GFF6539 0.22 -2.5
36,088 - GFF6539 0.22 -0.2
36,088 - GFF6539 0.22 -1.8
36,088 - GFF6539 0.22 -0.9
36,111 + GFF6539 0.24 -0.4
36,177 + GFF6539 0.28 -0.9
36,178 - GFF6539 0.28 +2.1
36,178 - GFF6539 0.28 -0.4
36,178 - GFF6539 0.28 +0.1
36,180 + GFF6539 0.28 -2.0
36,465 + GFF6539 0.47 -0.5
36,466 - GFF6539 0.47 -2.3
36,528 + GFF6539 0.51 +0.0
36,528 + GFF6539 0.51 -0.2
36,528 + GFF6539 0.51 -0.2
36,528 + GFF6539 0.51 -1.5
36,528 + GFF6539 0.51 -0.8
36,528 + GFF6539 0.51 +0.7
36,528 + GFF6539 0.51 -0.4
36,528 + GFF6539 0.51 +0.2
36,528 + GFF6539 0.51 -0.5
36,528 + GFF6539 0.51 -0.8
36,528 + GFF6539 0.51 -0.8
36,528 + GFF6539 0.51 -0.5
36,529 - GFF6539 0.51 -0.3
36,529 - GFF6539 0.51 -1.2
36,529 - GFF6539 0.51 -0.8
36,529 - GFF6539 0.51 +1.1
36,693 + GFF6539 0.61 +1.1
36,694 - GFF6539 0.61 -0.3
36,717 + GFF6539 0.63 +0.1
36,969 + GFF6539 0.79 -0.9
37,061 + GFF6539 0.85 +0.2
37,061 + GFF6539 0.85 +0.0
37,062 - GFF6539 0.85 -1.9
37,062 - GFF6539 0.85 -0.8
37,062 - GFF6539 0.85 -0.5
37,438 + GFF6540 0.12 +1.0
37,439 - GFF6540 0.13 -0.9
37,439 - GFF6540 0.13 +1.1
37,465 + GFF6540 0.15 +1.2
37,465 + GFF6540 0.15 -0.2
37,465 + GFF6540 0.15 -0.0
37,465 + GFF6540 0.15 +0.3
37,465 + GFF6540 0.15 -0.8
37,609 + GFF6540 0.28 -0.5
37,817 - GFF6540 0.46 -1.4
37,846 + GFF6540 0.48 +0.4
37,867 + GFF6540 0.50 +1.0
37,867 + GFF6540 0.50 -0.7
37,867 + GFF6540 0.50 -0.3
37,868 - GFF6540 0.50 +1.4
38,008 + GFF6540 0.63 -0.4
38,008 + GFF6540 0.63 +0.5
38,008 + GFF6540 0.63 +0.1
38,008 + GFF6540 0.63 +0.1
38,008 + GFF6540 0.63 -0.5
38,009 - GFF6540 0.63 -0.9
38,009 - GFF6540 0.63 -0.2
38,009 - GFF6540 0.63 -1.0
38,009 - GFF6540 0.63 +0.5
38,009 - GFF6540 0.63 +0.5
38,009 - GFF6540 0.63 -0.3
38,116 + GFF6540 0.72 -0.0
38,116 + GFF6540 0.72 +0.4
38,117 - GFF6540 0.72 +0.2
38,117 - GFF6540 0.72 +0.3
38,257 + GFF6540 0.85 +0.4
38,258 - GFF6540 0.85 -0.3

Or see this region's nucleotide sequence