Strain Fitness in Variovorax sp. SCN45 around GFF6523

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6522 and GFF6523 are separated by 81 nucleotidesGFF6523 and GFF6524 are separated by 16 nucleotides GFF6522 - Zinc-regulated outer membrane receptor, at 16,897 to 18,990 GFF6522 GFF6523 - hypothetical protein, at 19,072 to 19,467 GFF6523 GFF6524 - Zinc-regulated outer membrane receptor, at 19,484 to 21,658 GFF6524 Position (kb) 19 20Strain fitness (log2 ratio) -2 -1 0 1 2at 18.186 kb on - strand, within GFF6522at 18.186 kb on - strand, within GFF6522at 18.186 kb on - strand, within GFF6522at 18.186 kb on - strand, within GFF6522at 18.186 kb on - strand, within GFF6522at 18.186 kb on - strand, within GFF6522at 18.197 kb on + strand, within GFF6522at 18.197 kb on + strand, within GFF6522at 18.198 kb on - strand, within GFF6522at 18.198 kb on - strand, within GFF6522at 18.198 kb on - strand, within GFF6522at 18.238 kb on + strand, within GFF6522at 18.239 kb on - strand, within GFF6522at 18.450 kb on - strand, within GFF6522at 18.545 kb on + strand, within GFF6522at 18.546 kb on - strand, within GFF6522at 18.620 kb on + strand, within GFF6522at 18.620 kb on + strand, within GFF6522at 18.620 kb on + strand, within GFF6522at 18.621 kb on - strand, within GFF6522at 18.725 kb on + strand, within GFF6522at 18.726 kb on - strand, within GFF6522at 18.726 kb on - strand, within GFF6522at 19.142 kb on + strand, within GFF6523at 19.142 kb on + strand, within GFF6523at 19.226 kb on + strand, within GFF6523at 19.227 kb on - strand, within GFF6523at 19.509 kb on + strandat 19.509 kb on + strandat 19.510 kb on - strandat 19.510 kb on - strandat 19.510 kb on - strandat 19.575 kb on + strandat 19.575 kb on + strandat 19.575 kb on + strandat 19.575 kb on + strandat 19.575 kb on + strandat 19.576 kb on - strandat 19.576 kb on - strandat 19.576 kb on - strandat 19.576 kb on - strandat 19.576 kb on - strandat 19.576 kb on - strandat 19.576 kb on - strandat 19.653 kb on + strandat 19.675 kb on - strandat 19.675 kb on - strandat 19.800 kb on + strand, within GFF6524at 19.800 kb on + strand, within GFF6524at 19.800 kb on + strand, within GFF6524at 19.800 kb on + strand, within GFF6524at 19.800 kb on + strand, within GFF6524at 19.801 kb on - strand, within GFF6524at 19.821 kb on + strand, within GFF6524at 19.822 kb on - strand, within GFF6524at 19.822 kb on - strand, within GFF6524at 19.827 kb on + strand, within GFF6524at 19.827 kb on + strand, within GFF6524at 19.827 kb on + strand, within GFF6524at 19.827 kb on + strand, within GFF6524at 19.828 kb on - strand, within GFF6524at 19.828 kb on - strand, within GFF6524at 19.828 kb on - strand, within GFF6524at 19.828 kb on - strand, within GFF6524at 19.828 kb on - strand, within GFF6524at 19.828 kb on - strand, within GFF6524at 19.842 kb on + strand, within GFF6524at 19.843 kb on - strand, within GFF6524at 19.843 kb on - strand, within GFF6524at 19.843 kb on - strand, within GFF6524at 19.843 kb on - strand, within GFF6524at 19.843 kb on - strand, within GFF6524at 19.945 kb on + strand, within GFF6524at 19.947 kb on + strand, within GFF6524at 19.947 kb on + strand, within GFF6524at 19.947 kb on + strand, within GFF6524at 19.947 kb on + strand, within GFF6524at 19.948 kb on - strand, within GFF6524at 19.989 kb on + strand, within GFF6524at 19.990 kb on - strand, within GFF6524at 19.990 kb on - strand, within GFF6524at 19.990 kb on - strand, within GFF6524at 19.990 kb on - strand, within GFF6524at 20.058 kb on + strand, within GFF6524at 20.058 kb on + strand, within GFF6524at 20.058 kb on + strand, within GFF6524at 20.059 kb on - strand, within GFF6524at 20.059 kb on - strand, within GFF6524at 20.059 kb on - strand, within GFF6524at 20.059 kb on - strand, within GFF6524at 20.059 kb on - strand, within GFF6524at 20.061 kb on + strand, within GFF6524at 20.061 kb on + strand, within GFF6524at 20.061 kb on + strand, within GFF6524at 20.061 kb on + strand, within GFF6524at 20.062 kb on - strand, within GFF6524at 20.062 kb on - strand, within GFF6524at 20.062 kb on - strand, within GFF6524at 20.122 kb on - strand, within GFF6524at 20.187 kb on + strand, within GFF6524at 20.238 kb on + strand, within GFF6524at 20.238 kb on + strand, within GFF6524at 20.239 kb on - strand, within GFF6524at 20.247 kb on + strand, within GFF6524at 20.248 kb on - strand, within GFF6524at 20.283 kb on + strand, within GFF6524at 20.283 kb on + strand, within GFF6524at 20.284 kb on - strand, within GFF6524at 20.284 kb on - strand, within GFF6524at 20.343 kb on + strand, within GFF6524at 20.355 kb on + strand, within GFF6524at 20.355 kb on + strand, within GFF6524at 20.355 kb on + strand, within GFF6524at 20.356 kb on - strand, within GFF6524at 20.356 kb on - strand, within GFF6524at 20.356 kb on - strand, within GFF6524at 20.400 kb on + strand, within GFF6524at 20.400 kb on + strand, within GFF6524at 20.400 kb on + strand, within GFF6524at 20.400 kb on + strand, within GFF6524at 20.401 kb on - strand, within GFF6524at 20.401 kb on - strand, within GFF6524at 20.401 kb on - strand, within GFF6524

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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18,186 - GFF6522 0.62 +0.5
18,186 - GFF6522 0.62 +0.4
18,186 - GFF6522 0.62 +0.5
18,186 - GFF6522 0.62 +0.3
18,186 - GFF6522 0.62 -0.3
18,186 - GFF6522 0.62 -0.8
18,197 + GFF6522 0.62 +1.1
18,197 + GFF6522 0.62 -0.2
18,198 - GFF6522 0.62 -0.0
18,198 - GFF6522 0.62 +0.2
18,198 - GFF6522 0.62 -0.5
18,238 + GFF6522 0.64 -0.5
18,239 - GFF6522 0.64 -0.5
18,450 - GFF6522 0.74 +0.8
18,545 + GFF6522 0.79 -0.4
18,546 - GFF6522 0.79 -0.4
18,620 + GFF6522 0.82 -0.8
18,620 + GFF6522 0.82 -0.3
18,620 + GFF6522 0.82 -0.7
18,621 - GFF6522 0.82 -0.7
18,725 + GFF6522 0.87 -0.1
18,726 - GFF6522 0.87 +1.0
18,726 - GFF6522 0.87 -0.2
19,142 + GFF6523 0.18 -1.3
19,142 + GFF6523 0.18 -0.0
19,226 + GFF6523 0.39 -0.0
19,227 - GFF6523 0.39 -0.6
19,509 + +1.1
19,509 + -0.2
19,510 - -0.0
19,510 - +0.2
19,510 - -0.6
19,575 + -0.1
19,575 + +0.7
19,575 + +0.9
19,575 + +0.3
19,575 + -0.7
19,576 - +0.8
19,576 - -0.3
19,576 - +0.2
19,576 - -0.0
19,576 - -0.2
19,576 - -1.0
19,576 - +2.5
19,653 + -0.6
19,675 - +0.2
19,675 - +1.5
19,800 + GFF6524 0.15 -0.3
19,800 + GFF6524 0.15 -0.4
19,800 + GFF6524 0.15 -0.8
19,800 + GFF6524 0.15 -1.0
19,800 + GFF6524 0.15 -0.3
19,801 - GFF6524 0.15 -1.3
19,821 + GFF6524 0.15 -1.0
19,822 - GFF6524 0.16 -0.8
19,822 - GFF6524 0.16 -0.2
19,827 + GFF6524 0.16 +0.7
19,827 + GFF6524 0.16 -0.2
19,827 + GFF6524 0.16 -0.5
19,827 + GFF6524 0.16 -0.9
19,828 - GFF6524 0.16 +0.2
19,828 - GFF6524 0.16 +0.5
19,828 - GFF6524 0.16 -0.3
19,828 - GFF6524 0.16 -0.0
19,828 - GFF6524 0.16 +0.4
19,828 - GFF6524 0.16 +0.3
19,842 + GFF6524 0.16 +0.1
19,843 - GFF6524 0.17 -0.1
19,843 - GFF6524 0.17 -0.1
19,843 - GFF6524 0.17 -0.0
19,843 - GFF6524 0.17 +0.2
19,843 - GFF6524 0.17 -0.1
19,945 + GFF6524 0.21 -1.2
19,947 + GFF6524 0.21 +1.5
19,947 + GFF6524 0.21 +0.1
19,947 + GFF6524 0.21 +0.4
19,947 + GFF6524 0.21 +0.1
19,948 - GFF6524 0.21 +0.3
19,989 + GFF6524 0.23 +0.3
19,990 - GFF6524 0.23 -0.7
19,990 - GFF6524 0.23 -0.0
19,990 - GFF6524 0.23 -0.6
19,990 - GFF6524 0.23 +0.5
20,058 + GFF6524 0.26 -0.3
20,058 + GFF6524 0.26 -1.9
20,058 + GFF6524 0.26 -0.9
20,059 - GFF6524 0.26 +0.3
20,059 - GFF6524 0.26 +0.5
20,059 - GFF6524 0.26 +0.5
20,059 - GFF6524 0.26 -0.1
20,059 - GFF6524 0.26 -0.1
20,061 + GFF6524 0.27 -1.0
20,061 + GFF6524 0.27 +0.9
20,061 + GFF6524 0.27 +0.2
20,061 + GFF6524 0.27 +0.5
20,062 - GFF6524 0.27 +0.7
20,062 - GFF6524 0.27 -0.9
20,062 - GFF6524 0.27 -0.5
20,122 - GFF6524 0.29 +0.4
20,187 + GFF6524 0.32 -0.9
20,238 + GFF6524 0.35 -0.8
20,238 + GFF6524 0.35 -0.0
20,239 - GFF6524 0.35 +0.1
20,247 + GFF6524 0.35 -1.0
20,248 - GFF6524 0.35 +0.3
20,283 + GFF6524 0.37 -0.3
20,283 + GFF6524 0.37 -0.2
20,284 - GFF6524 0.37 -1.0
20,284 - GFF6524 0.37 -0.6
20,343 + GFF6524 0.39 -0.5
20,355 + GFF6524 0.40 +1.5
20,355 + GFF6524 0.40 -2.0
20,355 + GFF6524 0.40 +0.3
20,356 - GFF6524 0.40 -0.8
20,356 - GFF6524 0.40 -1.9
20,356 - GFF6524 0.40 +0.7
20,400 + GFF6524 0.42 -0.2
20,400 + GFF6524 0.42 -0.5
20,400 + GFF6524 0.42 -0.0
20,400 + GFF6524 0.42 +0.2
20,401 - GFF6524 0.42 -0.3
20,401 - GFF6524 0.42 -0.6
20,401 - GFF6524 0.42 -1.2

Or see this region's nucleotide sequence