Strain Fitness in Variovorax sp. SCN45 around GFF6500

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6498 and GFF6499 are separated by 5 nucleotidesGFF6499 and GFF6500 are separated by 122 nucleotidesGFF6500 and GFF6501 are separated by 52 nucleotides GFF6498 - FIG00348192: hypothetical protein, at 74,771 to 76,363 GFF6498 GFF6499 - hypothetical protein, at 76,369 to 76,848 GFF6499 GFF6500 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 76,971 to 77,657 GFF6500 GFF6501 - Uncharacterized MFS-type transporter, at 77,710 to 79,119 GFF6501 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1at 76.748 kb on + strand, within GFF6499at 76.749 kb on - strand, within GFF6499at 76.767 kb on - strand, within GFF6499at 76.832 kb on - strandat 76.956 kb on + strandat 76.967 kb on + strandat 76.967 kb on + strandat 76.967 kb on + strandat 76.967 kb on + strandat 76.968 kb on - strandat 77.113 kb on + strand, within GFF6500at 77.113 kb on + strand, within GFF6500at 77.113 kb on + strand, within GFF6500at 77.113 kb on + strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.254 kb on + strand, within GFF6500at 77.254 kb on + strand, within GFF6500at 77.255 kb on - strand, within GFF6500at 77.347 kb on + strand, within GFF6500at 77.347 kb on + strand, within GFF6500at 77.347 kb on + strand, within GFF6500at 77.347 kb on + strand, within GFF6500at 77.450 kb on - strand, within GFF6500at 77.450 kb on - strand, within GFF6500at 77.768 kb on + strandat 77.769 kb on - strandat 77.769 kb on - strandat 77.769 kb on - strandat 78.056 kb on + strand, within GFF6501at 78.066 kb on - strand, within GFF6501at 78.131 kb on + strand, within GFF6501at 78.131 kb on + strand, within GFF6501at 78.132 kb on - strand, within GFF6501at 78.132 kb on - strand, within GFF6501at 78.137 kb on + strand, within GFF6501at 78.137 kb on + strand, within GFF6501at 78.138 kb on - strand, within GFF6501at 78.138 kb on - strand, within GFF6501at 78.138 kb on - strand, within GFF6501at 78.272 kb on + strand, within GFF6501at 78.272 kb on + strand, within GFF6501at 78.272 kb on + strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.317 kb on + strand, within GFF6501at 78.318 kb on - strand, within GFF6501at 78.318 kb on - strand, within GFF6501at 78.497 kb on + strand, within GFF6501at 78.497 kb on + strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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76,748 + GFF6499 0.79 -0.4
76,749 - GFF6499 0.79 +0.3
76,767 - GFF6499 0.83 +0.4
76,832 - -0.8
76,956 + +0.2
76,967 + +0.6
76,967 + +0.9
76,967 + +0.1
76,967 + -0.2
76,968 - +0.9
77,113 + GFF6500 0.21 -1.8
77,113 + GFF6500 0.21 -1.1
77,113 + GFF6500 0.21 -0.0
77,113 + GFF6500 0.21 +0.6
77,114 - GFF6500 0.21 +0.2
77,114 - GFF6500 0.21 -0.3
77,114 - GFF6500 0.21 -1.8
77,114 - GFF6500 0.21 -0.4
77,114 - GFF6500 0.21 -0.3
77,114 - GFF6500 0.21 -0.4
77,114 - GFF6500 0.21 -1.1
77,114 - GFF6500 0.21 -0.4
77,254 + GFF6500 0.41 -0.6
77,254 + GFF6500 0.41 -1.7
77,255 - GFF6500 0.41 -0.5
77,347 + GFF6500 0.55 -0.5
77,347 + GFF6500 0.55 -0.3
77,347 + GFF6500 0.55 -0.3
77,347 + GFF6500 0.55 -0.8
77,450 - GFF6500 0.70 -0.3
77,450 - GFF6500 0.70 -0.6
77,768 + -0.4
77,769 - -0.2
77,769 - -2.2
77,769 - +0.1
78,056 + GFF6501 0.25 +0.3
78,066 - GFF6501 0.25 -0.7
78,131 + GFF6501 0.30 -0.5
78,131 + GFF6501 0.30 -0.9
78,132 - GFF6501 0.30 +0.1
78,132 - GFF6501 0.30 -0.7
78,137 + GFF6501 0.30 +0.3
78,137 + GFF6501 0.30 -0.4
78,138 - GFF6501 0.30 -0.7
78,138 - GFF6501 0.30 -0.9
78,138 - GFF6501 0.30 -0.3
78,272 + GFF6501 0.40 -0.4
78,272 + GFF6501 0.40 -0.6
78,272 + GFF6501 0.40 +0.5
78,273 - GFF6501 0.40 -0.4
78,273 - GFF6501 0.40 -0.3
78,273 - GFF6501 0.40 -2.5
78,273 - GFF6501 0.40 +1.1
78,273 - GFF6501 0.40 +0.7
78,273 - GFF6501 0.40 +0.4
78,273 - GFF6501 0.40 +0.0
78,273 - GFF6501 0.40 -0.2
78,317 + GFF6501 0.43 +0.8
78,318 - GFF6501 0.43 +0.2
78,318 - GFF6501 0.43 +0.5
78,497 + GFF6501 0.56 -1.3
78,497 + GFF6501 0.56 +0.3
78,498 - GFF6501 0.56 -1.1
78,498 - GFF6501 0.56 +0.1
78,498 - GFF6501 0.56 +0.1
78,498 - GFF6501 0.56 -0.8
78,575 + GFF6501 0.61 -1.1
78,575 + GFF6501 0.61 +0.2
78,575 + GFF6501 0.61 -0.6
78,575 + GFF6501 0.61 -0.4
78,575 + GFF6501 0.61 -0.9
78,575 + GFF6501 0.61 -1.8
78,575 + GFF6501 0.61 -0.9
78,575 + GFF6501 0.61 -0.8
78,575 + GFF6501 0.61 +0.3
78,575 + GFF6501 0.61 +0.5
78,575 + GFF6501 0.61 -0.4
78,575 + GFF6501 0.61 +1.2
78,575 + GFF6501 0.61 +0.3
78,576 - GFF6501 0.61 -0.1
78,576 - GFF6501 0.61 -0.1
78,576 - GFF6501 0.61 -0.3
78,576 - GFF6501 0.61 +0.5
78,576 - GFF6501 0.61 +0.2
78,576 - GFF6501 0.61 +0.9
78,576 - GFF6501 0.61 -0.2

Or see this region's nucleotide sequence