Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6384 and GFF6385 are separated by 21 nucleotides GFF6385 and GFF6386 are separated by 8 nucleotides GFF6386 and GFF6387 are separated by 324 nucleotides
GFF6384 - Peptide synthase, at 56,621 to 57,262
GFF6384
GFF6385 - Mll4878 protein, at 57,284 to 58,201
GFF6385
GFF6386 - 6-hydroxynicotinate reductase (EC 1.3.7.1), at 58,210 to 59,838
GFF6386
GFF6387 - Ferredoxin--NADP(+) reductase (EC 1.18.1.2) @ Flavodoxin--NADP(+) reductase (EC 1.19.1.1), at 60,163 to 60,936
GFF6387
Position (kb) 58
59
60 Strain fitness (log2 ratio) -1
0
1
2 at 57.342 kb on - strand at 57.342 kb on - strand at 57.393 kb on - strand, within GFF6385 at 57.885 kb on + strand, within GFF6385 at 57.885 kb on + strand, within GFF6385 at 58.111 kb on - strand at 58.367 kb on + strand at 58.368 kb on - strand at 58.420 kb on + strand, within GFF6386 at 58.420 kb on + strand, within GFF6386 at 58.719 kb on - strand, within GFF6386 at 58.719 kb on - strand, within GFF6386 at 58.866 kb on - strand, within GFF6386 at 59.352 kb on - strand, within GFF6386 at 59.352 kb on - strand, within GFF6386 at 59.652 kb on - strand, within GFF6386 at 59.947 kb on + strand at 59.947 kb on + strand at 59.996 kb on + strand at 60.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 57,342 - +0.5 57,342 - +0.6 57,393 - GFF6385 0.12 -0.6 57,885 + GFF6385 0.65 -0.2 57,885 + GFF6385 0.65 -0.1 58,111 - -0.6 58,367 + +1.8 58,368 - +0.8 58,420 + GFF6386 0.13 -0.3 58,420 + GFF6386 0.13 +0.4 58,719 - GFF6386 0.31 -1.1 58,719 - GFF6386 0.31 -0.2 58,866 - GFF6386 0.40 -1.5 59,352 - GFF6386 0.70 -0.7 59,352 - GFF6386 0.70 -0.5 59,652 - GFF6386 0.89 -0.4 59,947 + +1.0 59,947 + -0.2 59,996 + -0.5 60,163 - +0.1
Or see this region's nucleotide sequence