Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6350 and GFF6351 are separated by 31 nucleotides GFF6351 and GFF6352 are separated by 1 nucleotides GFF6352 and GFF6353 overlap by 1 nucleotides
GFF6350 - T6SS Serine/threonine protein kinase (EC 2.7.11.1) PpkA, at 11,737 to 13,650
GFF6350
GFF6351 - T6SS associated component TagF (ImpM), at 13,682 to 14,395
GFF6351
GFF6352 - T6SS component TssM (IcmF/VasK), at 14,397 to 18,056
GFF6352
GFF6353 - T6SS outer membrane component TssL (ImpK/VasF) / OmpA/MotB domain, at 18,056 to 19,426
GFF6353
Position (kb) 14
15
16
17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.503 kb on - strand at 13.797 kb on + strand, within GFF6351 at 13.879 kb on + strand, within GFF6351 at 13.879 kb on + strand, within GFF6351 at 14.025 kb on + strand, within GFF6351 at 14.025 kb on + strand, within GFF6351 at 14.062 kb on - strand, within GFF6351 at 14.103 kb on + strand, within GFF6351 at 14.205 kb on + strand, within GFF6351 at 14.206 kb on - strand, within GFF6351 at 14.206 kb on - strand, within GFF6351 at 14.452 kb on + strand at 14.452 kb on + strand at 14.452 kb on + strand at 14.452 kb on + strand at 14.453 kb on - strand at 14.702 kb on - strand at 14.860 kb on + strand, within GFF6352 at 15.277 kb on + strand, within GFF6352 at 15.277 kb on + strand, within GFF6352 at 15.278 kb on - strand, within GFF6352 at 15.278 kb on - strand, within GFF6352 at 15.673 kb on + strand, within GFF6352 at 15.674 kb on - strand, within GFF6352 at 15.960 kb on + strand, within GFF6352 at 15.960 kb on + strand, within GFF6352 at 15.961 kb on - strand, within GFF6352 at 15.980 kb on - strand, within GFF6352 at 16.216 kb on + strand, within GFF6352 at 16.235 kb on - strand, within GFF6352 at 16.235 kb on - strand, within GFF6352 at 16.235 kb on - strand, within GFF6352 at 16.384 kb on + strand, within GFF6352 at 16.558 kb on + strand, within GFF6352 at 16.559 kb on - strand, within GFF6352 at 16.736 kb on - strand, within GFF6352 at 16.736 kb on - strand, within GFF6352 at 16.786 kb on + strand, within GFF6352 at 16.850 kb on - strand, within GFF6352 at 17.042 kb on - strand, within GFF6352 at 17.183 kb on - strand, within GFF6352 at 17.227 kb on - strand, within GFF6352 at 17.452 kb on + strand, within GFF6352 at 17.626 kb on + strand, within GFF6352 at 17.626 kb on + strand, within GFF6352 at 17.626 kb on + strand, within GFF6352 at 17.626 kb on + strand, within GFF6352 at 17.627 kb on - strand, within GFF6352 at 18.030 kb on - strand at 18.396 kb on + strand, within GFF6353 at 18.876 kb on + strand, within GFF6353 at 18.877 kb on - strand, within GFF6353 at 18.877 kb on - strand, within GFF6353
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,463 + +0.7 13,463 + -1.1 13,463 + -0.2 13,463 + -0.2 13,463 + +1.0 13,463 + +0.6 13,463 + +0.4 13,464 - +0.0 13,464 - -0.4 13,464 - -0.5 13,464 - +0.0 13,464 - -0.5 13,503 - +0.1 13,797 + GFF6351 0.16 -0.0 13,879 + GFF6351 0.28 -0.7 13,879 + GFF6351 0.28 +0.8 14,025 + GFF6351 0.48 -0.4 14,025 + GFF6351 0.48 -0.1 14,062 - GFF6351 0.53 -0.5 14,103 + GFF6351 0.59 +0.8 14,205 + GFF6351 0.73 +1.1 14,206 - GFF6351 0.73 -0.2 14,206 - GFF6351 0.73 -0.3 14,452 + -0.1 14,452 + -0.6 14,452 + -0.0 14,452 + +0.6 14,453 - +1.0 14,702 - -0.5 14,860 + GFF6352 0.13 -0.3 15,277 + GFF6352 0.24 +1.2 15,277 + GFF6352 0.24 +0.1 15,278 - GFF6352 0.24 -0.3 15,278 - GFF6352 0.24 -0.0 15,673 + GFF6352 0.35 +0.0 15,674 - GFF6352 0.35 +0.0 15,960 + GFF6352 0.43 -0.2 15,960 + GFF6352 0.43 +1.0 15,961 - GFF6352 0.43 -0.4 15,980 - GFF6352 0.43 +0.6 16,216 + GFF6352 0.50 -0.2 16,235 - GFF6352 0.50 -0.6 16,235 - GFF6352 0.50 -0.2 16,235 - GFF6352 0.50 +0.3 16,384 + GFF6352 0.54 +0.6 16,558 + GFF6352 0.59 +0.8 16,559 - GFF6352 0.59 +1.3 16,736 - GFF6352 0.64 +0.1 16,736 - GFF6352 0.64 -0.4 16,786 + GFF6352 0.65 -1.9 16,850 - GFF6352 0.67 -1.3 17,042 - GFF6352 0.72 +0.6 17,183 - GFF6352 0.76 -0.5 17,227 - GFF6352 0.77 +1.8 17,452 + GFF6352 0.83 -0.6 17,626 + GFF6352 0.88 -0.2 17,626 + GFF6352 0.88 +0.7 17,626 + GFF6352 0.88 -0.1 17,626 + GFF6352 0.88 -0.2 17,627 - GFF6352 0.88 -1.3 18,030 - -0.1 18,396 + GFF6353 0.25 -0.3 18,876 + GFF6353 0.60 +3.8 18,877 - GFF6353 0.60 -0.5 18,877 - GFF6353 0.60 -0.5
Or see this region's nucleotide sequence