Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6290 and GFF6291 are separated by 17 nucleotides GFF6291 and GFF6292 overlap by 4 nucleotides GFF6292 and GFF6293 are separated by 125 nucleotides GFF6293 and GFF6294 are separated by 152 nucleotides
GFF6290 - RNA polymerase sigma-54 factor RpoN, at 79,558 to 81,159
GFF6290
GFF6291 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 81,177 to 81,971
GFF6291
GFF6292 - Lipopolysaccharide export system protein LptA, at 81,968 to 82,678
GFF6292
GFF6293 - Periplasmic thiol:disulfide interchange protein DsbA, at 82,804 to 83,451
GFF6293
GFF6294 - Cell division protein, at 83,604 to 84,368
GFF6294
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2 at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.178 kb on + strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.179 kb on - strand at 81.984 kb on - strand at 82.678 kb on + strand at 82.678 kb on + strand at 82.678 kb on + strand at 82.678 kb on + strand at 82.678 kb on + strand at 82.679 kb on - strand at 82.679 kb on - strand at 82.679 kb on - strand at 82.679 kb on - strand at 82.679 kb on - strand at 82.679 kb on - strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.705 kb on + strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.706 kb on - strand at 82.832 kb on + strand at 82.832 kb on + strand at 82.832 kb on + strand at 82.832 kb on + strand at 82.832 kb on + strand at 82.832 kb on + strand at 82.832 kb on + strand at 82.832 kb on + strand at 82.832 kb on + strand at 82.832 kb on + strand at 82.833 kb on - strand at 82.833 kb on - strand at 82.833 kb on - strand at 82.833 kb on - strand at 82.833 kb on - strand at 82.833 kb on - strand at 82.833 kb on - strand at 82.886 kb on + strand, within GFF6293 at 82.886 kb on + strand, within GFF6293 at 82.886 kb on + strand, within GFF6293 at 82.887 kb on - strand, within GFF6293 at 82.887 kb on - strand, within GFF6293 at 82.887 kb on - strand, within GFF6293 at 82.887 kb on - strand, within GFF6293 at 82.931 kb on + strand, within GFF6293 at 82.931 kb on + strand, within GFF6293 at 82.931 kb on + strand, within GFF6293 at 82.932 kb on - strand, within GFF6293 at 82.932 kb on - strand, within GFF6293 at 83.105 kb on + strand, within GFF6293 at 83.105 kb on + strand, within GFF6293 at 83.105 kb on + strand, within GFF6293 at 83.106 kb on - strand, within GFF6293 at 83.138 kb on + strand, within GFF6293 at 83.138 kb on + strand, within GFF6293 at 83.138 kb on + strand, within GFF6293 at 83.139 kb on - strand, within GFF6293 at 83.139 kb on - strand, within GFF6293 at 83.139 kb on - strand, within GFF6293 at 83.141 kb on + strand, within GFF6293 at 83.141 kb on + strand, within GFF6293 at 83.141 kb on + strand, within GFF6293 at 83.142 kb on - strand, within GFF6293 at 83.142 kb on - strand, within GFF6293 at 83.142 kb on - strand, within GFF6293 at 83.142 kb on - strand, within GFF6293 at 83.142 kb on - strand, within GFF6293 at 83.273 kb on + strand, within GFF6293 at 83.273 kb on + strand, within GFF6293 at 83.273 kb on + strand, within GFF6293 at 83.274 kb on - strand, within GFF6293 at 83.345 kb on + strand, within GFF6293 at 83.345 kb on + strand, within GFF6293 at 83.345 kb on + strand, within GFF6293 at 83.346 kb on - strand, within GFF6293 at 83.472 kb on + strand at 83.472 kb on + strand at 83.473 kb on - strand at 83.567 kb on + strand at 83.567 kb on + strand at 83.567 kb on + strand at 83.567 kb on + strand at 83.567 kb on + strand at 83.567 kb on + strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.568 kb on - strand at 83.574 kb on + strand at 83.574 kb on + strand at 83.574 kb on + strand at 83.574 kb on + strand at 83.574 kb on + strand at 83.574 kb on + strand at 83.574 kb on + strand at 83.574 kb on + strand at 83.575 kb on - strand at 83.575 kb on - strand at 83.575 kb on - strand at 83.575 kb on - strand at 83.575 kb on - strand at 83.575 kb on - strand at 83.575 kb on - strand at 83.575 kb on - strand at 83.575 kb on - strand at 83.575 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 81,178 + -0.8 81,178 + -0.5 81,178 + -0.2 81,178 + -0.2 81,178 + +0.4 81,178 + +0.8 81,178 + -0.5 81,178 + +0.6 81,178 + +1.1 81,178 + +0.2 81,178 + -0.7 81,178 + -0.2 81,178 + -0.1 81,178 + -1.2 81,178 + +0.5 81,178 + +0.1 81,178 + -0.1 81,178 + +0.1 81,179 - +0.3 81,179 - -0.6 81,179 - +0.2 81,179 - +0.3 81,179 - +0.1 81,179 - +0.5 81,179 - +0.4 81,179 - +0.2 81,179 - +0.8 81,179 - -0.2 81,179 - -0.6 81,179 - -0.2 81,179 - +0.1 81,179 - -0.3 81,179 - +0.7 81,179 - +0.1 81,179 - -1.4 81,179 - -0.0 81,179 - +0.0 81,179 - -0.0 81,179 - -0.3 81,179 - -0.5 81,179 - +0.2 81,179 - +0.1 81,179 - -0.9 81,179 - +0.8 81,984 - -0.3 82,678 + +0.1 82,678 + -0.2 82,678 + -1.0 82,678 + +1.0 82,678 + +0.6 82,679 - +0.5 82,679 - -0.1 82,679 - -0.3 82,679 - +1.5 82,679 - -1.8 82,679 - -0.2 82,705 + -0.4 82,705 + -0.3 82,705 + -0.3 82,705 + -0.6 82,705 + -0.5 82,705 + -0.8 82,705 + +0.9 82,705 + +0.0 82,705 + +0.1 82,705 + -2.7 82,705 + +1.4 82,705 + +0.7 82,705 + +0.1 82,705 + +0.1 82,705 + +0.6 82,706 - +0.1 82,706 - -0.3 82,706 - -0.1 82,706 - -0.3 82,706 - -0.8 82,706 - -0.4 82,706 - -1.0 82,706 - -0.8 82,706 - -1.5 82,706 - +0.7 82,706 - +0.4 82,706 - -0.1 82,706 - +0.8 82,706 - +0.2 82,706 - +0.3 82,706 - -0.4 82,706 - -0.4 82,832 + -1.0 82,832 + +0.6 82,832 + +0.5 82,832 + -0.8 82,832 + -0.9 82,832 + +0.1 82,832 + -0.0 82,832 + -0.8 82,832 + +1.0 82,832 + +1.0 82,833 - +0.8 82,833 - -1.7 82,833 - +1.2 82,833 - +1.3 82,833 - +0.8 82,833 - +0.8 82,833 - -1.4 82,886 + GFF6293 0.13 -0.2 82,886 + GFF6293 0.13 -0.4 82,886 + GFF6293 0.13 -0.0 82,887 - GFF6293 0.13 +0.1 82,887 - GFF6293 0.13 +0.5 82,887 - GFF6293 0.13 -0.5 82,887 - GFF6293 0.13 -1.2 82,931 + GFF6293 0.20 -0.0 82,931 + GFF6293 0.20 +0.8 82,931 + GFF6293 0.20 +1.8 82,932 - GFF6293 0.20 -0.2 82,932 - GFF6293 0.20 +0.5 83,105 + GFF6293 0.46 -2.2 83,105 + GFF6293 0.46 -0.8 83,105 + GFF6293 0.46 +1.0 83,106 - GFF6293 0.47 -1.2 83,138 + GFF6293 0.52 +1.2 83,138 + GFF6293 0.52 +0.2 83,138 + GFF6293 0.52 -0.5 83,139 - GFF6293 0.52 +0.8 83,139 - GFF6293 0.52 -0.4 83,139 - GFF6293 0.52 -0.8 83,141 + GFF6293 0.52 -2.1 83,141 + GFF6293 0.52 -0.5 83,141 + GFF6293 0.52 -0.8 83,142 - GFF6293 0.52 +1.8 83,142 - GFF6293 0.52 +1.8 83,142 - GFF6293 0.52 +1.8 83,142 - GFF6293 0.52 +0.8 83,142 - GFF6293 0.52 -0.2 83,273 + GFF6293 0.72 -0.2 83,273 + GFF6293 0.72 -1.0 83,273 + GFF6293 0.72 +0.5 83,274 - GFF6293 0.73 +0.8 83,345 + GFF6293 0.83 +0.5 83,345 + GFF6293 0.83 -1.1 83,345 + GFF6293 0.83 -1.0 83,346 - GFF6293 0.84 +0.3 83,472 + +0.2 83,472 + +0.4 83,473 - -1.0 83,567 + +0.4 83,567 + +0.3 83,567 + +0.2 83,567 + +0.9 83,567 + +0.1 83,567 + +0.4 83,568 - -0.1 83,568 - +0.6 83,568 - +0.4 83,568 - -0.8 83,568 - -0.5 83,568 - +0.7 83,568 - +0.9 83,568 - +0.5 83,568 - +1.1 83,568 - +0.5 83,568 - -0.4 83,568 - -0.2 83,574 + -1.5 83,574 + -0.1 83,574 + -0.6 83,574 + -0.3 83,574 + -0.0 83,574 + +0.5 83,574 + -0.3 83,574 + -0.7 83,575 - -0.5 83,575 - -0.3 83,575 - -0.3 83,575 - +0.4 83,575 - -0.3 83,575 - -1.6 83,575 - -0.4 83,575 - -0.3 83,575 - -0.2 83,575 - +1.1
Or see this region's nucleotide sequence