Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6257 and GFF6258 overlap by 4 nucleotides GFF6258 and GFF6259 overlap by 4 nucleotides GFF6259 and GFF6260 are separated by 1 nucleotides GFF6260 and GFF6261 overlap by 4 nucleotides
GFF6257 - Phosphonates utilization ATP-binding protein PhnK, at 50,695 to 51,483
GFF6257
GFF6258 - Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase (EC 4.7.1.1), at 51,480 to 52,352
GFF6258
GFF6259 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI (EC 2.7.8.37), at 52,349 to 53,446
GFF6259
GFF6260 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH (EC 2.7.8.37), at 53,448 to 54,077
GFF6260
GFF6261 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG (EC 2.7.8.37), at 54,074 to 54,577
GFF6261
Position (kb) 52
53
54 Strain fitness (log2 ratio) -1
0
1 at 51.426 kb on - strand at 51.697 kb on + strand, within GFF6258 at 51.698 kb on - strand, within GFF6258 at 51.713 kb on - strand, within GFF6258 at 51.713 kb on - strand, within GFF6258 at 51.713 kb on - strand, within GFF6258 at 51.713 kb on - strand, within GFF6258 at 51.841 kb on + strand, within GFF6258 at 51.841 kb on + strand, within GFF6258 at 51.841 kb on + strand, within GFF6258 at 51.841 kb on + strand, within GFF6258 at 51.841 kb on + strand, within GFF6258 at 51.841 kb on + strand, within GFF6258 at 51.842 kb on - strand, within GFF6258 at 51.842 kb on - strand, within GFF6258 at 51.880 kb on + strand, within GFF6258 at 51.986 kb on - strand, within GFF6258 at 52.322 kb on - strand at 52.322 kb on - strand at 52.333 kb on + strand at 52.333 kb on + strand at 52.333 kb on + strand at 52.334 kb on - strand at 52.419 kb on + strand at 52.419 kb on + strand at 52.419 kb on + strand at 52.419 kb on + strand at 52.419 kb on + strand at 52.419 kb on + strand at 52.419 kb on + strand at 52.419 kb on + strand at 52.603 kb on - strand, within GFF6259 at 52.794 kb on + strand, within GFF6259 at 52.795 kb on - strand, within GFF6259 at 52.932 kb on - strand, within GFF6259 at 52.932 kb on - strand, within GFF6259 at 53.076 kb on + strand, within GFF6259 at 53.077 kb on - strand, within GFF6259 at 53.077 kb on - strand, within GFF6259 at 53.082 kb on + strand, within GFF6259 at 53.082 kb on + strand, within GFF6259 at 53.082 kb on + strand, within GFF6259 at 53.083 kb on - strand, within GFF6259 at 53.083 kb on - strand, within GFF6259 at 53.206 kb on - strand, within GFF6259 at 53.283 kb on + strand, within GFF6259 at 53.283 kb on + strand, within GFF6259 at 53.283 kb on + strand, within GFF6259 at 53.283 kb on + strand, within GFF6259 at 53.284 kb on - strand, within GFF6259 at 53.401 kb on - strand at 53.401 kb on - strand at 53.401 kb on - strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 53.443 kb on - strand at 54.303 kb on + strand, within GFF6261 at 54.303 kb on + strand, within GFF6261 at 54.304 kb on - strand, within GFF6261 at 54.304 kb on - strand, within GFF6261
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 51,426 - -0.7 51,697 + GFF6258 0.25 +0.3 51,698 - GFF6258 0.25 -0.1 51,713 - GFF6258 0.27 -0.8 51,713 - GFF6258 0.27 -0.3 51,713 - GFF6258 0.27 -0.9 51,713 - GFF6258 0.27 -0.4 51,841 + GFF6258 0.41 -0.7 51,841 + GFF6258 0.41 -1.5 51,841 + GFF6258 0.41 -0.2 51,841 + GFF6258 0.41 +1.4 51,841 + GFF6258 0.41 -0.1 51,841 + GFF6258 0.41 -0.6 51,842 - GFF6258 0.41 +0.2 51,842 - GFF6258 0.41 -0.4 51,880 + GFF6258 0.46 -0.4 51,986 - GFF6258 0.58 -1.3 52,322 - -0.5 52,322 - -0.2 52,333 + -0.4 52,333 + -0.5 52,333 + +0.7 52,334 - +0.2 52,419 + +0.2 52,419 + -0.5 52,419 + -0.9 52,419 + -0.3 52,419 + -0.3 52,419 + -0.4 52,419 + -0.3 52,419 + -0.5 52,603 - GFF6259 0.23 -0.5 52,794 + GFF6259 0.41 +0.7 52,795 - GFF6259 0.41 +1.6 52,932 - GFF6259 0.53 -1.2 52,932 - GFF6259 0.53 -0.3 53,076 + GFF6259 0.66 +0.2 53,077 - GFF6259 0.66 -0.6 53,077 - GFF6259 0.66 +0.0 53,082 + GFF6259 0.67 +0.3 53,082 + GFF6259 0.67 +0.4 53,082 + GFF6259 0.67 -0.4 53,083 - GFF6259 0.67 -0.7 53,083 - GFF6259 0.67 +0.9 53,206 - GFF6259 0.78 +0.3 53,283 + GFF6259 0.85 -0.0 53,283 + GFF6259 0.85 -0.0 53,283 + GFF6259 0.85 +0.2 53,283 + GFF6259 0.85 -0.6 53,284 - GFF6259 0.85 +0.8 53,401 - -0.0 53,401 - -0.8 53,401 - -0.3 53,442 + -0.5 53,442 + -0.6 53,442 + -0.2 53,442 + -0.2 53,442 + +0.5 53,442 + -0.5 53,442 + -0.3 53,442 + -0.4 53,442 + +0.7 53,442 + +0.3 53,442 + -0.2 53,442 + -1.2 53,442 + -0.3 53,442 + -0.3 53,442 + -0.5 53,442 + -0.5 53,443 - +0.0 53,443 - -0.2 53,443 - +1.2 53,443 - -0.4 53,443 - +0.1 53,443 - +0.4 53,443 - +0.8 53,443 - +0.1 53,443 - -0.6 53,443 - -0.5 53,443 - +0.1 53,443 - +0.0 53,443 - -1.3 53,443 - +1.5 53,443 - +1.5 53,443 - -0.2 53,443 - -0.4 54,303 + GFF6261 0.45 -0.2 54,303 + GFF6261 0.45 -0.5 54,304 - GFF6261 0.46 +0.4 54,304 - GFF6261 0.46 +0.7
Or see this region's nucleotide sequence