Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF622 and GFF623 overlap by 4 nucleotides GFF623 and GFF624 are separated by 76 nucleotides GFF624 and GFF625 are separated by 175 nucleotides
GFF622 - BUG/TctC family periplasmic protein, at 669,542 to 670,528
GFF622
GFF623 - Demethylmenaquinone methyltransferase-like protein, at 670,525 to 671,253
GFF623
GFF624 - hypothetical protein, at 671,330 to 671,680
GFF624
GFF625 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 671,856 to 673,421
GFF625
Position (kb) 671
672 Strain fitness (log2 ratio) -1
0
1 at 671.090 kb on + strand, within GFF623 at 671.091 kb on - strand, within GFF623 at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.331 kb on + strand at 671.332 kb on - strand at 671.332 kb on - strand at 671.332 kb on - strand at 671.374 kb on - strand, within GFF624 at 671.520 kb on + strand, within GFF624 at 671.607 kb on + strand, within GFF624 at 672.019 kb on + strand, within GFF625 at 672.019 kb on + strand, within GFF625 at 672.020 kb on - strand, within GFF625 at 672.020 kb on - strand, within GFF625 at 672.020 kb on - strand, within GFF625 at 672.647 kb on - strand, within GFF625
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 671,090 + GFF623 0.78 -0.2 671,091 - GFF623 0.78 -0.7 671,331 + -0.4 671,331 + -1.2 671,331 + -0.8 671,331 + +0.3 671,331 + -0.0 671,331 + +1.4 671,332 - -0.3 671,332 - +0.0 671,332 - -0.4 671,374 - GFF624 0.13 -0.9 671,520 + GFF624 0.54 +0.2 671,607 + GFF624 0.79 -1.5 672,019 + GFF625 0.10 -0.1 672,019 + GFF625 0.10 +0.3 672,020 - GFF625 0.10 -0.2 672,020 - GFF625 0.10 -0.4 672,020 - GFF625 0.10 -0.1 672,647 - GFF625 0.51 -1.1
Or see this region's nucleotide sequence