Strain Fitness in Variovorax sp. SCN45 around GFF6189

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
93,815	+				-0.1
93,815	+				-0.6
93,815	+				-0.8
93,815	+				-1.4
93,815	+				-0.5
93,816	-				+0.3
93,816	-				-0.6
93,816	-				-0.6
93,866	+				-0.9
93,880	+				-0.3
93,881	-				+0.4
93,881	-				+0.9
93,881	-				-1.3
93,917	-				-0.4
93,937	+				-1.2
93,937	+				+0.4
93,937	+				-0.1
93,946	+				-0.3
93,946	+				+0.0
93,946	+				-0.6
93,946	+				-0.2
93,946	+				-0.2
93,946	+				+0.1
93,946	+				-0.3
93,946	+				+1.1
93,946	+				-1.4
93,947	-				+0.5
93,947	-				-1.2
93,947	-				-0.5
93,947	-				-0.1
93,947	-				-1.6
94,783	+		GFF6189	0.18	+0.2
94,783	+		GFF6189	0.18	-0.3
94,798	+		GFF6189	0.20	+1.5
94,798	+		GFF6189	0.20	-0.2
94,799	-		GFF6189	0.20	+1.1
94,799	-		GFF6189	0.20	-0.6
94,906	+		GFF6189	0.36	+0.3
94,906	+		GFF6189	0.36	-0.7
94,906	+		GFF6189	0.36	-1.3
94,906	+		GFF6189	0.36	-0.3
94,906	+		GFF6189	0.36	+0.2
94,906	+		GFF6189	0.36	+1.8
94,906	+		GFF6189	0.36	+0.1
94,906	+		GFF6189	0.36	-0.2
94,906	+		GFF6189	0.36	+0.0
94,906	+		GFF6189	0.36	-0.8
94,906	+		GFF6189	0.36	-1.1
94,906	+		GFF6189	0.36	+0.1
94,906	+		GFF6189	0.36	+0.0
94,906	+		GFF6189	0.36	+0.5
94,906	+		GFF6189	0.36	+2.0
94,907	-		GFF6189	0.36	-0.1
94,907	-		GFF6189	0.36	+1.5
94,907	-		GFF6189	0.36	-0.1
94,907	-		GFF6189	0.36	-0.6
94,907	-		GFF6189	0.36	-0.5
94,907	-		GFF6189	0.36	-0.3
94,907	-		GFF6189	0.36	-0.1
94,907	-		GFF6189	0.36	-0.3
94,907	-		GFF6189	0.36	-0.2
94,907	-		GFF6189	0.36	+0.2
94,907	-		GFF6189	0.36	+1.7
94,961	+		GFF6189	0.44	-0.8
94,961	+		GFF6189	0.44	+0.4
94,961	+		GFF6189	0.44	-0.8
94,962	-		GFF6189	0.44	+0.4
94,962	-		GFF6189	0.44	-1.5
94,962	-		GFF6189	0.44	-0.3
94,962	-		GFF6189	0.44	+1.1
94,962	-		GFF6189	0.44	+0.9
95,167	+		GFF6189	0.75	+1.7
95,167	+		GFF6189	0.75	-0.7
95,167	+		GFF6189	0.75	-0.3
95,167	+		GFF6189	0.75	-0.3
95,167	+		GFF6189	0.75	-0.7
95,167	+		GFF6189	0.75	+0.4
95,167	+		GFF6189	0.75	-0.0
95,167	+		GFF6189	0.75	-0.3
95,167	+		GFF6189	0.75	+0.1
95,167	+		GFF6189	0.75	-0.3
95,167	+		GFF6189	0.75	-0.8
95,167	+		GFF6189	0.75	-1.1
95,167	+		GFF6189	0.75	+0.2
95,167	+		GFF6189	0.75	+0.7
95,167	+		GFF6189	0.75	+0.4
95,167	+		GFF6189	0.75	+0.2
95,167	+		GFF6189	0.75	-1.8
95,167	+		GFF6189	0.75	-0.5
95,167	+		GFF6189	0.75	+0.3
95,167	+		GFF6189	0.75	-1.5
95,167	+		GFF6189	0.75	+1.4
95,167	+		GFF6189	0.75	+0.4
95,168	-		GFF6189	0.75	+0.5
95,168	-		GFF6189	0.75	-0.2
95,168	-		GFF6189	0.75	-0.2
95,168	-		GFF6189	0.75	-0.1
95,168	-		GFF6189	0.75	+0.2
95,168	-		GFF6189	0.75	-0.4
95,168	-		GFF6189	0.75	-0.3
95,168	-		GFF6189	0.75	+0.0
95,168	-		GFF6189	0.75	-0.8
95,168	-		GFF6189	0.75	+0.3
95,168	-		GFF6189	0.75	-0.1
95,168	-		GFF6189	0.75	-0.2
95,168	-		GFF6189	0.75	+0.2
95,168	-		GFF6189	0.75	-0.6
95,168	-		GFF6189	0.75	-0.7
95,168	-		GFF6189	0.75	-0.8
95,168	-		GFF6189	0.75	-0.2
95,220	+		GFF6189	0.83	+0.8
95,220	+		GFF6189	0.83	-1.1
95,220	+		GFF6189	0.83	+0.2
95,220	+		GFF6189	0.83	-0.2
95,221	-		GFF6189	0.83	-0.2
95,221	-		GFF6189	0.83	-0.2
95,236	+		GFF6189	0.85	-0.5
95,236	+		GFF6189	0.85	-0.1
95,236	+		GFF6189	0.85	-0.2
95,237	-		GFF6189	0.85	+0.4
95,237	-		GFF6189	0.85	+0.7
95,237	-		GFF6189	0.85	+1.1
95,237	-		GFF6189	0.85	+0.3
95,237	-		GFF6189	0.85	+0.8
95,237	-		GFF6189	0.85	+1.5
95,237	-		GFF6189	0.85	-1.1
95,242	+		GFF6189	0.86	-0.3
95,242	+		GFF6189	0.86	-0.5
95,242	+		GFF6189	0.86	+0.1
95,242	+		GFF6189	0.86	+0.0
95,242	+		GFF6189	0.86	-0.8
95,242	+		GFF6189	0.86	-0.6
95,243	-		GFF6189	0.86	-0.1
95,243	-		GFF6189	0.86	-0.9
95,291	+				-0.6
95,291	+				+0.5
95,291	+				-0.3
95,291	+				+0.5
95,291	+				-0.7
95,292	-				+0.5
95,292	-				-0.1
95,292	-				-0.1
95,318	+				-0.1
95,318	+				+0.5
95,412	+				-1.0
95,412	+				-0.1
95,413	-				+0.1
95,432	+				-1.3
95,432	+				-2.2
95,433	-				+0.1
95,433	-				-0.1
95,433	-				-0.5
95,467	+				-1.2
95,467	+				-0.9
95,468	-				-0.6
95,468	-				-0.3
95,550	+				-0.8
95,554	+				+1.9
95,554	+				+1.1
95,554	+				-0.8
95,554	+				-0.3
95,554	+				-0.3
95,554	+				+0.1
95,554	+				+0.5
95,554	+				-0.4
95,554	+				-0.4
95,554	+				-0.3
95,554	+				-0.4
95,554	+				-0.1
95,554	+				+0.5
95,554	+				-0.9
95,554	+				-0.4
95,554	+				-0.5
95,554	+				-0.8
95,554	+				-1.3
95,554	+				-0.5
95,554	+				-1.8
95,554	+				-2.4
95,555	-				-0.1
95,555	-				-2.5
95,555	-				-0.5
95,555	-				-0.8
95,555	-				-1.3
95,555	-				-1.1
95,555	-				+0.1
95,555	-				-0.8
95,555	-				-0.6
95,555	-				-0.1
95,579	-				+1.2
95,601	+				+1.1
95,601	+				-1.0
95,601	+				+0.9
95,601	+				-1.6
95,621	+				-0.9
95,655	+				-1.7
95,655	+				-1.1
95,655	+				-0.6
95,656	-				-0.1
95,668	+				+0.3
95,668	+				-1.6
95,668	+				-2.6
95,668	+				-0.5
95,668	+				-1.1
95,669	-				+0.7
95,676	+				-1.3
95,676	+				+0.5
95,676	+				-1.3
95,676	+				-0.7
95,676	+				-0.5
95,676	+				-0.8
95,677	-				+0.3
95,677	-				+0.3
95,677	-				-1.3
95,677	-				-0.8
95,677	-				-1.1
95,677	-				-1.1
95,677	-				-2.1
95,677	-				-0.8
95,677	-				-0.1
95,677	-				-0.5
95,916	+		GFF6190	0.15	-0.3
95,916	+		GFF6190	0.15	-0.2
95,916	+		GFF6190	0.15	-0.2
95,916	+		GFF6190	0.15	-0.6
95,916	+		GFF6190	0.15	-1.1
95,916	+		GFF6190	0.15	-0.6
95,916	+		GFF6190	0.15	-0.0
95,917	-		GFF6190	0.15	-0.8
95,917	-		GFF6190	0.15	-0.1
95,917	-		GFF6190	0.15	+0.2
95,917	-		GFF6190	0.15	+0.1
95,917	-		GFF6190	0.15	+0.9
95,917	-		GFF6190	0.15	-1.6
95,917	-		GFF6190	0.15	-0.2
95,917	-		GFF6190	0.15	-0.8
95,919	+		GFF6190	0.15	-1.1
95,919	+		GFF6190	0.15	+0.2
95,920	-		GFF6190	0.15	-0.9
95,920	-		GFF6190	0.15	+0.1
95,920	-		GFF6190	0.15	-0.7