Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6146 and GFF6147 are separated by 23 nucleotides GFF6147 and GFF6148 are separated by 6 nucleotides GFF6148 and GFF6149 are separated by 38 nucleotides
GFF6146 - Phosphonoacetate hydrolase (EC 3.11.1.2), at 50,261 to 51,487
GFF6146
GFF6147 - Phosphonoacetaldehyde dehydrogenase (NAD+), at 51,511 to 52,959
GFF6147
GFF6148 - hypothetical protein, at 52,966 to 53,532
GFF6148
GFF6149 - FAD-dependent oxidoreductase, at 53,571 to 54,959
GFF6149
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1 at 50.519 kb on + strand, within GFF6146 at 50.519 kb on + strand, within GFF6146 at 50.571 kb on - strand, within GFF6146 at 50.777 kb on + strand, within GFF6146 at 50.777 kb on + strand, within GFF6146 at 50.853 kb on - strand, within GFF6146 at 50.853 kb on - strand, within GFF6146 at 51.035 kb on + strand, within GFF6146 at 51.035 kb on + strand, within GFF6146 at 51.035 kb on + strand, within GFF6146 at 51.063 kb on - strand, within GFF6146 at 51.149 kb on + strand, within GFF6146 at 51.150 kb on - strand, within GFF6146 at 51.150 kb on - strand, within GFF6146 at 51.663 kb on - strand, within GFF6147 at 51.721 kb on + strand, within GFF6147 at 52.108 kb on + strand, within GFF6147 at 52.108 kb on + strand, within GFF6147 at 52.109 kb on - strand, within GFF6147 at 52.607 kb on - strand, within GFF6147 at 52.607 kb on - strand, within GFF6147 at 52.761 kb on + strand, within GFF6147 at 53.023 kb on + strand, within GFF6148 at 53.476 kb on + strand at 53.476 kb on + strand at 53.476 kb on + strand at 53.477 kb on - strand at 53.477 kb on - strand at 53.480 kb on - strand at 53.492 kb on + strand at 53.695 kb on + strand at 53.695 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 50,519 + GFF6146 0.21 +0.1 50,519 + GFF6146 0.21 +0.7 50,571 - GFF6146 0.25 +1.0 50,777 + GFF6146 0.42 -1.0 50,777 + GFF6146 0.42 -1.9 50,853 - GFF6146 0.48 +0.4 50,853 - GFF6146 0.48 -0.2 51,035 + GFF6146 0.63 -0.0 51,035 + GFF6146 0.63 +0.9 51,035 + GFF6146 0.63 +0.4 51,063 - GFF6146 0.65 -0.6 51,149 + GFF6146 0.72 -0.3 51,150 - GFF6146 0.72 -0.6 51,150 - GFF6146 0.72 -1.8 51,663 - GFF6147 0.10 -0.2 51,721 + GFF6147 0.14 -0.5 52,108 + GFF6147 0.41 +0.5 52,108 + GFF6147 0.41 +0.2 52,109 - GFF6147 0.41 -0.1 52,607 - GFF6147 0.76 +0.1 52,607 - GFF6147 0.76 +0.1 52,761 + GFF6147 0.86 +0.1 53,023 + GFF6148 0.10 -0.6 53,476 + -0.2 53,476 + -0.9 53,476 + +1.3 53,477 - -0.5 53,477 - -0.4 53,480 - +0.7 53,492 + -0.2 53,695 + +0.2 53,695 + +0.3
Or see this region's nucleotide sequence