Strain Fitness in Variovorax sp. SCN45 around GFF6111

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6110 and GFF6111 are separated by 133 nucleotidesGFF6111 and GFF6112 overlap by 4 nucleotides GFF6110 - N-acyl-D-amino-acid deacylase (EC 3.5.1.81), at 8,570 to 10,033 GFF6110 GFF6111 - Oligopeptide ABC transporter, ATP-binding protein OppF (TC 3.A.1.5.1), at 10,167 to 11,165 GFF6111 GFF6112 - Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1), at 11,162 to 12,193 GFF6112 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1at 9.177 kb on + strand, within GFF6110at 9.177 kb on + strand, within GFF6110at 9.177 kb on + strand, within GFF6110at 9.177 kb on + strand, within GFF6110at 9.178 kb on - strand, within GFF6110at 9.178 kb on - strand, within GFF6110at 9.178 kb on - strand, within GFF6110at 9.178 kb on - strand, within GFF6110at 9.178 kb on - strand, within GFF6110at 9.184 kb on - strand, within GFF6110at 9.381 kb on + strand, within GFF6110at 9.382 kb on - strand, within GFF6110at 9.382 kb on - strand, within GFF6110at 9.382 kb on - strand, within GFF6110at 9.382 kb on - strand, within GFF6110at 9.382 kb on - strand, within GFF6110at 9.457 kb on - strand, within GFF6110at 9.832 kb on + strand, within GFF6110at 9.832 kb on + strand, within GFF6110at 9.832 kb on + strand, within GFF6110at 9.833 kb on - strand, within GFF6110at 9.833 kb on - strand, within GFF6110at 9.945 kb on - strandat 9.945 kb on - strandat 10.011 kb on + strandat 10.012 kb on - strandat 10.080 kb on - strandat 10.080 kb on - strandat 10.394 kb on - strand, within GFF6111at 10.394 kb on - strand, within GFF6111at 10.456 kb on + strand, within GFF6111at 10.456 kb on + strand, within GFF6111at 10.457 kb on - strand, within GFF6111at 10.457 kb on - strand, within GFF6111at 10.520 kb on - strand, within GFF6111at 10.846 kb on + strand, within GFF6111at 10.969 kb on - strand, within GFF6111at 11.110 kb on + strandat 11.111 kb on - strandat 11.111 kb on - strandat 11.111 kb on - strandat 11.346 kb on - strand, within GFF6112at 11.409 kb on + strand, within GFF6112at 11.409 kb on + strand, within GFF6112at 11.410 kb on - strand, within GFF6112at 11.472 kb on + strand, within GFF6112at 11.472 kb on + strand, within GFF6112at 11.472 kb on + strand, within GFF6112at 11.472 kb on + strand, within GFF6112at 11.472 kb on + strand, within GFF6112at 11.472 kb on + strand, within GFF6112at 11.472 kb on + strand, within GFF6112at 11.473 kb on - strand, within GFF6112at 11.473 kb on - strand, within GFF6112at 11.473 kb on - strand, within GFF6112at 11.473 kb on - strand, within GFF6112at 11.706 kb on + strand, within GFF6112at 11.807 kb on + strand, within GFF6112at 11.807 kb on + strand, within GFF6112at 12.073 kb on - strand, within GFF6112

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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9,177 + GFF6110 0.41 -0.6
9,177 + GFF6110 0.41 -0.8
9,177 + GFF6110 0.41 -0.3
9,177 + GFF6110 0.41 -1.1
9,178 - GFF6110 0.42 -1.6
9,178 - GFF6110 0.42 -0.9
9,178 - GFF6110 0.42 +0.5
9,178 - GFF6110 0.42 +0.6
9,178 - GFF6110 0.42 -0.3
9,184 - GFF6110 0.42 -0.2
9,381 + GFF6110 0.55 +1.5
9,382 - GFF6110 0.55 -0.3
9,382 - GFF6110 0.55 +0.8
9,382 - GFF6110 0.55 -0.9
9,382 - GFF6110 0.55 +1.0
9,382 - GFF6110 0.55 +0.0
9,457 - GFF6110 0.61 +1.5
9,832 + GFF6110 0.86 -0.6
9,832 + GFF6110 0.86 -0.1
9,832 + GFF6110 0.86 +0.5
9,833 - GFF6110 0.86 -0.2
9,833 - GFF6110 0.86 +0.3
9,945 - -0.5
9,945 - -0.4
10,011 + -0.3
10,012 - +0.6
10,080 - +0.7
10,080 - +0.3
10,394 - GFF6111 0.23 +0.4
10,394 - GFF6111 0.23 +0.1
10,456 + GFF6111 0.29 -0.2
10,456 + GFF6111 0.29 +0.1
10,457 - GFF6111 0.29 -0.2
10,457 - GFF6111 0.29 +0.5
10,520 - GFF6111 0.35 +1.0
10,846 + GFF6111 0.68 +0.2
10,969 - GFF6111 0.80 -0.3
11,110 + -2.7
11,111 - +0.1
11,111 - -0.1
11,111 - +0.3
11,346 - GFF6112 0.18 +1.0
11,409 + GFF6112 0.24 +0.2
11,409 + GFF6112 0.24 -2.2
11,410 - GFF6112 0.24 +0.7
11,472 + GFF6112 0.30 +0.1
11,472 + GFF6112 0.30 -0.5
11,472 + GFF6112 0.30 -0.5
11,472 + GFF6112 0.30 +0.0
11,472 + GFF6112 0.30 -2.0
11,472 + GFF6112 0.30 -0.9
11,472 + GFF6112 0.30 -1.1
11,473 - GFF6112 0.30 +0.1
11,473 - GFF6112 0.30 -0.3
11,473 - GFF6112 0.30 -0.8
11,473 - GFF6112 0.30 -0.9
11,706 + GFF6112 0.53 +0.9
11,807 + GFF6112 0.62 -1.2
11,807 + GFF6112 0.62 -0.1
12,073 - GFF6112 0.88 +0.1

Or see this region's nucleotide sequence