Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6072 and GFF6073 are separated by 66 nucleotides GFF6073 and GFF6074 are separated by 19 nucleotides GFF6074 and GFF6075 are separated by 145 nucleotides
GFF6072 - Transcriptional regulator, LysR family, at 134,263 to 135,189
GFF6072
GFF6073 - Tripartite tricarboxylate transporter TctA family, at 135,256 to 136,767
GFF6073
GFF6074 - Tripartite tricarboxylate transporter TctB family, at 136,787 to 137,275
GFF6074
GFF6075 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 137,421 to 139,217
GFF6075
Position (kb) 135
136
137 Strain fitness (log2 ratio) -1
0
1
2
3 at 134.262 kb on + strand at 134.929 kb on + strand, within GFF6072 at 134.930 kb on - strand, within GFF6072 at 134.930 kb on - strand, within GFF6072 at 134.930 kb on - strand, within GFF6072 at 134.930 kb on - strand, within GFF6072 at 135.016 kb on + strand, within GFF6072 at 135.017 kb on - strand, within GFF6072 at 135.017 kb on - strand, within GFF6072 at 135.017 kb on - strand, within GFF6072 at 135.017 kb on - strand, within GFF6072 at 135.095 kb on + strand, within GFF6072 at 135.095 kb on + strand, within GFF6072 at 135.096 kb on - strand, within GFF6072 at 135.488 kb on + strand, within GFF6073 at 135.488 kb on + strand, within GFF6073 at 135.488 kb on + strand, within GFF6073 at 135.489 kb on - strand, within GFF6073 at 135.489 kb on - strand, within GFF6073 at 135.489 kb on - strand, within GFF6073 at 135.489 kb on - strand, within GFF6073 at 135.489 kb on - strand, within GFF6073 at 135.489 kb on - strand, within GFF6073 at 135.548 kb on + strand, within GFF6073 at 135.590 kb on + strand, within GFF6073 at 135.590 kb on + strand, within GFF6073 at 135.590 kb on + strand, within GFF6073 at 135.590 kb on + strand, within GFF6073 at 135.590 kb on + strand, within GFF6073 at 135.590 kb on + strand, within GFF6073 at 135.590 kb on + strand, within GFF6073 at 135.591 kb on - strand, within GFF6073 at 135.591 kb on - strand, within GFF6073 at 135.591 kb on - strand, within GFF6073 at 135.596 kb on + strand, within GFF6073 at 135.596 kb on + strand, within GFF6073 at 135.596 kb on + strand, within GFF6073 at 135.596 kb on + strand, within GFF6073 at 135.596 kb on + strand, within GFF6073 at 135.597 kb on - strand, within GFF6073 at 135.597 kb on - strand, within GFF6073 at 135.929 kb on + strand, within GFF6073 at 135.929 kb on + strand, within GFF6073 at 135.929 kb on + strand, within GFF6073 at 135.930 kb on - strand, within GFF6073 at 135.930 kb on - strand, within GFF6073 at 135.930 kb on - strand, within GFF6073 at 136.611 kb on - strand, within GFF6073 at 136.704 kb on - strand at 136.704 kb on - strand at 136.704 kb on - strand at 136.851 kb on + strand, within GFF6074 at 136.851 kb on + strand, within GFF6074 at 136.851 kb on + strand, within GFF6074 at 136.852 kb on - strand, within GFF6074 at 136.852 kb on - strand, within GFF6074 at 136.852 kb on - strand, within GFF6074 at 136.852 kb on - strand, within GFF6074 at 136.941 kb on + strand, within GFF6074 at 136.941 kb on + strand, within GFF6074 at 136.941 kb on + strand, within GFF6074 at 136.942 kb on - strand, within GFF6074 at 136.942 kb on - strand, within GFF6074 at 137.154 kb on + strand, within GFF6074 at 137.154 kb on + strand, within GFF6074 at 137.155 kb on - strand, within GFF6074 at 137.190 kb on + strand, within GFF6074 at 137.190 kb on + strand, within GFF6074 at 137.191 kb on - strand, within GFF6074 at 137.191 kb on - strand, within GFF6074 at 137.191 kb on - strand, within GFF6074 at 137.191 kb on - strand, within GFF6074 at 137.191 kb on - strand, within GFF6074 at 137.363 kb on - strand at 137.415 kb on + strand at 137.417 kb on + strand at 137.417 kb on + strand at 137.417 kb on + strand at 137.417 kb on + strand at 137.417 kb on + strand at 137.417 kb on + strand at 137.417 kb on + strand at 137.417 kb on + strand at 137.417 kb on + strand at 137.418 kb on - strand at 137.418 kb on - strand at 137.418 kb on - strand at 137.418 kb on - strand at 137.423 kb on - strand at 137.605 kb on + strand, within GFF6075 at 137.605 kb on + strand, within GFF6075 at 137.605 kb on + strand, within GFF6075 at 137.606 kb on - strand, within GFF6075 at 137.626 kb on + strand, within GFF6075 at 137.626 kb on + strand, within GFF6075 at 137.627 kb on - strand, within GFF6075 at 137.665 kb on + strand, within GFF6075
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 134,262 + +0.6 134,929 + GFF6072 0.72 -0.7 134,930 - GFF6072 0.72 -0.4 134,930 - GFF6072 0.72 -0.6 134,930 - GFF6072 0.72 -0.6 134,930 - GFF6072 0.72 +0.6 135,016 + GFF6072 0.81 +1.0 135,017 - GFF6072 0.81 -0.1 135,017 - GFF6072 0.81 +0.0 135,017 - GFF6072 0.81 -0.6 135,017 - GFF6072 0.81 +0.9 135,095 + GFF6072 0.90 +0.3 135,095 + GFF6072 0.90 +0.0 135,096 - GFF6072 0.90 -0.5 135,488 + GFF6073 0.15 -0.5 135,488 + GFF6073 0.15 -0.9 135,488 + GFF6073 0.15 -0.0 135,489 - GFF6073 0.15 -0.5 135,489 - GFF6073 0.15 -1.3 135,489 - GFF6073 0.15 +0.1 135,489 - GFF6073 0.15 +2.2 135,489 - GFF6073 0.15 +0.4 135,489 - GFF6073 0.15 -1.0 135,548 + GFF6073 0.19 -0.2 135,590 + GFF6073 0.22 -1.2 135,590 + GFF6073 0.22 -1.2 135,590 + GFF6073 0.22 -0.8 135,590 + GFF6073 0.22 -0.4 135,590 + GFF6073 0.22 -0.2 135,590 + GFF6073 0.22 -0.1 135,590 + GFF6073 0.22 -0.0 135,591 - GFF6073 0.22 -1.0 135,591 - GFF6073 0.22 -0.4 135,591 - GFF6073 0.22 +0.1 135,596 + GFF6073 0.22 +0.8 135,596 + GFF6073 0.22 -0.8 135,596 + GFF6073 0.22 +0.9 135,596 + GFF6073 0.22 -0.6 135,596 + GFF6073 0.22 -0.5 135,597 - GFF6073 0.23 -0.7 135,597 - GFF6073 0.23 -1.0 135,929 + GFF6073 0.45 +0.0 135,929 + GFF6073 0.45 +0.3 135,929 + GFF6073 0.45 -0.5 135,930 - GFF6073 0.45 -0.1 135,930 - GFF6073 0.45 -0.6 135,930 - GFF6073 0.45 +0.5 136,611 - GFF6073 0.90 -1.2 136,704 - +0.0 136,704 - +1.2 136,704 - -0.8 136,851 + GFF6074 0.13 -1.0 136,851 + GFF6074 0.13 +1.6 136,851 + GFF6074 0.13 -0.6 136,852 - GFF6074 0.13 -0.1 136,852 - GFF6074 0.13 -1.2 136,852 - GFF6074 0.13 -0.4 136,852 - GFF6074 0.13 +0.0 136,941 + GFF6074 0.31 -0.1 136,941 + GFF6074 0.31 -0.1 136,941 + GFF6074 0.31 -0.5 136,942 - GFF6074 0.32 -0.3 136,942 - GFF6074 0.32 -0.6 137,154 + GFF6074 0.75 -0.2 137,154 + GFF6074 0.75 +1.4 137,155 - GFF6074 0.75 +1.6 137,190 + GFF6074 0.82 -0.4 137,190 + GFF6074 0.82 -0.1 137,191 - GFF6074 0.83 -0.6 137,191 - GFF6074 0.83 -0.2 137,191 - GFF6074 0.83 +3.1 137,191 - GFF6074 0.83 -1.1 137,191 - GFF6074 0.83 +0.3 137,363 - -0.5 137,415 + +1.1 137,417 + +0.1 137,417 + -0.3 137,417 + -0.1 137,417 + -0.4 137,417 + -0.5 137,417 + +0.9 137,417 + +0.0 137,417 + -0.4 137,417 + -0.3 137,418 - -0.5 137,418 - -0.9 137,418 - -0.7 137,418 - +0.6 137,423 - -0.6 137,605 + GFF6075 0.10 +0.6 137,605 + GFF6075 0.10 -0.3 137,605 + GFF6075 0.10 +0.8 137,606 - GFF6075 0.10 -0.8 137,626 + GFF6075 0.11 +0.0 137,626 + GFF6075 0.11 +0.1 137,627 - GFF6075 0.11 +0.4 137,665 + GFF6075 0.14 +0.4
Or see this region's nucleotide sequence