Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6029 and GFF6030 are separated by 0 nucleotides GFF6030 and GFF6031 are separated by 1 nucleotides GFF6031 and GFF6032 are separated by 20 nucleotides
GFF6029 - BUG/TctC family periplasmic protein, at 89,683 to 90,663
GFF6029
GFF6030 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 90,664 to 91,440
GFF6030
GFF6031 - Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1), at 91,442 to 92,221
GFF6031
GFF6032 - Branched-chain amino acid ABC transporter, permease protein LivM (TC 3.A.1.4.1), at 92,242 to 93,450
GFF6032
Position (kb) 91
92
93 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 90.622 kb on + strand at 90.622 kb on + strand at 90.622 kb on + strand at 90.622 kb on + strand at 90.677 kb on + strand at 90.755 kb on + strand, within GFF6030 at 90.755 kb on + strand, within GFF6030 at 90.756 kb on - strand, within GFF6030 at 90.756 kb on - strand, within GFF6030 at 90.756 kb on - strand, within GFF6030 at 90.756 kb on - strand, within GFF6030 at 91.064 kb on + strand, within GFF6030 at 91.064 kb on + strand, within GFF6030 at 91.064 kb on + strand, within GFF6030 at 91.064 kb on + strand, within GFF6030 at 91.065 kb on - strand, within GFF6030 at 91.065 kb on - strand, within GFF6030 at 91.065 kb on - strand, within GFF6030 at 91.464 kb on + strand at 91.465 kb on - strand at 91.465 kb on - strand at 91.465 kb on - strand at 91.530 kb on + strand, within GFF6031 at 91.530 kb on + strand, within GFF6031 at 91.531 kb on - strand, within GFF6031 at 91.531 kb on - strand, within GFF6031 at 91.531 kb on - strand, within GFF6031 at 91.531 kb on - strand, within GFF6031 at 91.746 kb on + strand, within GFF6031 at 91.767 kb on + strand, within GFF6031 at 91.767 kb on + strand, within GFF6031 at 91.794 kb on + strand, within GFF6031 at 91.794 kb on + strand, within GFF6031 at 91.794 kb on + strand, within GFF6031 at 91.795 kb on - strand, within GFF6031 at 91.795 kb on - strand, within GFF6031 at 91.795 kb on - strand, within GFF6031 at 92.007 kb on + strand, within GFF6031 at 92.049 kb on + strand, within GFF6031 at 92.049 kb on + strand, within GFF6031 at 92.050 kb on - strand, within GFF6031 at 92.050 kb on - strand, within GFF6031 at 92.112 kb on + strand, within GFF6031 at 92.113 kb on - strand, within GFF6031 at 92.113 kb on - strand, within GFF6031 at 92.299 kb on - strand at 92.528 kb on + strand, within GFF6032 at 92.528 kb on + strand, within GFF6032 at 92.528 kb on + strand, within GFF6032 at 92.528 kb on + strand, within GFF6032 at 92.528 kb on + strand, within GFF6032 at 92.528 kb on + strand, within GFF6032 at 92.874 kb on - strand, within GFF6032 at 92.874 kb on - strand, within GFF6032 at 92.874 kb on - strand, within GFF6032 at 92.874 kb on - strand, within GFF6032 at 92.874 kb on - strand, within GFF6032 at 92.874 kb on - strand, within GFF6032 at 92.874 kb on - strand, within GFF6032 at 92.876 kb on + strand, within GFF6032 at 92.876 kb on + strand, within GFF6032 at 92.876 kb on + strand, within GFF6032 at 92.876 kb on + strand, within GFF6032 at 92.876 kb on + strand, within GFF6032 at 92.877 kb on - strand, within GFF6032 at 92.877 kb on - strand, within GFF6032 at 92.879 kb on + strand, within GFF6032 at 92.879 kb on + strand, within GFF6032 at 92.879 kb on + strand, within GFF6032 at 92.880 kb on - strand, within GFF6032 at 92.880 kb on - strand, within GFF6032 at 92.880 kb on - strand, within GFF6032 at 92.880 kb on - strand, within GFF6032 at 93.065 kb on + strand, within GFF6032 at 93.066 kb on - strand, within GFF6032
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 90,622 + +0.7 90,622 + -0.3 90,622 + -0.6 90,622 + -0.2 90,677 + -1.1 90,755 + GFF6030 0.12 +0.0 90,755 + GFF6030 0.12 -1.7 90,756 - GFF6030 0.12 +0.6 90,756 - GFF6030 0.12 -1.3 90,756 - GFF6030 0.12 -1.4 90,756 - GFF6030 0.12 -0.5 91,064 + GFF6030 0.51 +0.3 91,064 + GFF6030 0.51 -1.4 91,064 + GFF6030 0.51 -0.6 91,064 + GFF6030 0.51 -0.1 91,065 - GFF6030 0.52 -1.0 91,065 - GFF6030 0.52 -0.7 91,065 - GFF6030 0.52 -0.8 91,464 + -0.2 91,465 - -0.6 91,465 - -0.7 91,465 - +0.6 91,530 + GFF6031 0.11 -0.9 91,530 + GFF6031 0.11 +1.0 91,531 - GFF6031 0.11 -1.5 91,531 - GFF6031 0.11 +0.2 91,531 - GFF6031 0.11 +0.2 91,531 - GFF6031 0.11 -1.5 91,746 + GFF6031 0.39 -1.0 91,767 + GFF6031 0.42 +0.3 91,767 + GFF6031 0.42 -1.2 91,794 + GFF6031 0.45 -0.1 91,794 + GFF6031 0.45 -0.9 91,794 + GFF6031 0.45 -0.2 91,795 - GFF6031 0.45 -0.8 91,795 - GFF6031 0.45 +0.3 91,795 - GFF6031 0.45 -1.0 92,007 + GFF6031 0.72 -1.0 92,049 + GFF6031 0.78 -1.0 92,049 + GFF6031 0.78 -0.2 92,050 - GFF6031 0.78 -0.5 92,050 - GFF6031 0.78 -0.9 92,112 + GFF6031 0.86 -0.5 92,113 - GFF6031 0.86 -0.7 92,113 - GFF6031 0.86 -2.1 92,299 - +0.6 92,528 + GFF6032 0.24 -0.4 92,528 + GFF6032 0.24 +0.4 92,528 + GFF6032 0.24 +0.0 92,528 + GFF6032 0.24 -0.3 92,528 + GFF6032 0.24 -1.7 92,528 + GFF6032 0.24 -0.4 92,874 - GFF6032 0.52 +0.6 92,874 - GFF6032 0.52 +0.4 92,874 - GFF6032 0.52 +1.2 92,874 - GFF6032 0.52 -1.0 92,874 - GFF6032 0.52 +3.2 92,874 - GFF6032 0.52 -0.7 92,874 - GFF6032 0.52 -0.7 92,876 + GFF6032 0.52 -0.7 92,876 + GFF6032 0.52 -2.1 92,876 + GFF6032 0.52 +2.2 92,876 + GFF6032 0.52 +0.3 92,876 + GFF6032 0.52 -1.2 92,877 - GFF6032 0.53 -1.3 92,877 - GFF6032 0.53 +1.6 92,879 + GFF6032 0.53 +0.1 92,879 + GFF6032 0.53 +0.0 92,879 + GFF6032 0.53 +0.2 92,880 - GFF6032 0.53 -0.5 92,880 - GFF6032 0.53 -1.2 92,880 - GFF6032 0.53 -1.3 92,880 - GFF6032 0.53 -0.9 93,065 + GFF6032 0.68 -0.1 93,066 - GFF6032 0.68 +0.6
Or see this region's nucleotide sequence