Strain Fitness in Variovorax sp. SCN45 around GFF6027

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
86,618	+				+0.9
86,618	+				-0.7
86,618	+				+0.9
86,618	+				-0.3
86,618	+				-0.7
86,618	+				+0.4
86,618	+				+0.3
86,618	+				+0.7
86,619	-				-0.0
86,619	-				+1.6
86,619	-				-1.1
86,619	-				+1.5
86,619	-				+0.0
86,619	-				+0.6
86,619	-				-0.6
86,619	-				+1.0
86,622	+				+0.6
86,622	+				+0.2
86,622	+				-0.2
86,622	+				-0.6
86,622	+				+0.2
86,622	+				-0.1
86,622	+				-0.2
86,623	-				-0.2
86,623	-				-0.2
86,623	-				-0.1
86,623	-				+0.9
86,623	-				-0.4
86,623	-				-1.0
86,623	-				-1.0
86,623	-				-1.0
86,623	-				-0.3
86,623	-				+1.0
86,623	-				-0.1
86,623	-				-1.5
86,623	-				-0.6
86,623	-				-0.7
86,623	-				-0.5
86,623	-				-1.2
86,623	-				-0.5
86,623	-				-0.3
86,623	-				-1.4
86,630	+				-0.2
86,631	-				-0.4
86,631	-				-0.7
86,641	+				+0.6
86,641	+				-1.0
86,641	+				+0.6
86,642	-				-0.1
86,642	-				-0.4
86,642	-				+0.0
86,642	-				+0.0
86,773	+				-0.6
86,774	-				-0.4
86,795	+				+0.6
86,795	+				-0.3
86,795	+				+0.0
86,795	+				+0.3
86,796	-				-1.1
86,796	-				-0.2
86,796	-				+0.4
86,796	-				-0.5
86,796	-				-0.4
86,804	+				-0.1
86,805	-				+0.6
86,805	-				+0.4
86,968	+		GFF6026	0.29	+0.4
86,968	+		GFF6026	0.29	-0.8
87,011	+		GFF6026	0.34	-1.0
87,011	+		GFF6026	0.34	+0.6
87,011	+		GFF6026	0.34	+0.1
87,011	+		GFF6026	0.34	+1.3
87,011	+		GFF6026	0.34	-0.3
87,012	-		GFF6026	0.34	-1.0
87,012	-		GFF6026	0.34	-0.2
87,012	-		GFF6026	0.34	+0.4
87,012	-		GFF6026	0.34	+0.6
87,012	-		GFF6026	0.34	+0.0
87,269	+		GFF6026	0.65	+0.1
87,269	+		GFF6026	0.65	-0.4
87,270	-		GFF6026	0.65	-0.7
87,270	-		GFF6026	0.65	-0.2
87,323	+		GFF6026	0.71	-0.7
87,323	+		GFF6026	0.71	-0.4
87,323	+		GFF6026	0.71	+0.3
87,323	+		GFF6026	0.71	-0.4
87,323	+		GFF6026	0.71	+0.1
87,323	+		GFF6026	0.71	+1.2
87,324	-		GFF6026	0.71	-0.3
87,324	-		GFF6026	0.71	-1.2
87,324	-		GFF6026	0.71	-0.5
87,324	-		GFF6026	0.71	-0.2
87,324	-		GFF6026	0.71	-0.4
87,540	+				-1.1
87,541	-				+0.2
87,541	-				+0.7
87,541	-				-0.2
87,541	-				+0.4
87,604	+				+0.5
87,605	-				+1.5
87,756	-		GFF6027	0.19	+0.3
87,780	+		GFF6027	0.21	+0.2
87,780	+		GFF6027	0.21	+0.3
87,780	+		GFF6027	0.21	+0.4
87,780	+		GFF6027	0.21	+0.6
87,780	+		GFF6027	0.21	+0.7
87,780	+		GFF6027	0.21	-0.0
87,780	+		GFF6027	0.21	-0.4
87,781	-		GFF6027	0.21	-1.5
87,781	-		GFF6027	0.21	+1.0
87,886	+		GFF6027	0.33	+0.1
87,886	+		GFF6027	0.33	-0.3
87,887	-		GFF6027	0.33	-0.4
87,895	+		GFF6027	0.34	-0.4
87,895	+		GFF6027	0.34	-0.1
87,895	+		GFF6027	0.34	-0.0
87,896	-		GFF6027	0.34	-0.5
87,897	+		GFF6027	0.34	+0.3
87,897	+		GFF6027	0.34	+0.6
87,897	+		GFF6027	0.34	+0.7
87,897	+		GFF6027	0.34	+0.5
87,897	+		GFF6027	0.34	-1.2
87,897	+		GFF6027	0.34	+0.4
87,898	-		GFF6027	0.34	-1.5
87,898	-		GFF6027	0.34	-0.2
87,898	-		GFF6027	0.34	-1.3
87,898	-		GFF6027	0.34	+1.6
87,898	-		GFF6027	0.34	+0.7
87,898	-		GFF6027	0.34	+0.8
87,898	-		GFF6027	0.34	-0.2
87,898	-		GFF6027	0.34	-0.2
87,898	-		GFF6027	0.34	-0.3
87,898	-		GFF6027	0.34	-0.0
87,928	+		GFF6027	0.37	-0.3
87,978	+		GFF6027	0.43	-0.6
87,978	+		GFF6027	0.43	-0.5
87,978	+		GFF6027	0.43	-0.6
87,978	+		GFF6027	0.43	-2.2
87,978	+		GFF6027	0.43	-1.5
87,978	+		GFF6027	0.43	+0.1
87,978	+		GFF6027	0.43	+0.3
87,978	+		GFF6027	0.43	-0.2
87,978	+		GFF6027	0.43	+0.2
87,978	+		GFF6027	0.43	+1.2
87,978	+		GFF6027	0.43	-0.8
87,978	+		GFF6027	0.43	-0.4
87,978	+		GFF6027	0.43	-0.1
87,978	+		GFF6027	0.43	+1.6
87,979	-		GFF6027	0.43	-0.5
87,979	-		GFF6027	0.43	+0.3
87,979	-		GFF6027	0.43	+0.4
87,979	-		GFF6027	0.43	-0.5
87,979	-		GFF6027	0.43	-0.2
87,979	-		GFF6027	0.43	+0.2
87,979	-		GFF6027	0.43	+1.0
87,979	-		GFF6027	0.43	-0.1
87,979	-		GFF6027	0.43	-0.8
87,979	-		GFF6027	0.43	+1.6
87,979	-		GFF6027	0.43	-0.2
88,131	+		GFF6027	0.59	-0.0
88,131	+		GFF6027	0.59	+0.5
88,132	-		GFF6027	0.59	-0.7
88,132	-		GFF6027	0.59	+0.0
88,132	-		GFF6027	0.59	+0.5
88,152	+		GFF6027	0.61	-0.4
88,153	-		GFF6027	0.61	-0.7
88,153	-		GFF6027	0.61	-1.4
88,498	+				+0.0
88,499	-				-1.5
88,499	-				-2.1
88,499	-				+0.1
88,499	-				-0.5
88,598	+				-0.4
88,598	+				-0.5
88,598	+				-2.6
88,598	+				-0.0
88,598	+				-1.5
88,598	+				+2.2
88,599	-				-0.7
88,599	-				+0.3
88,599	-				-0.2
88,716	+		GFF6028	0.12	-0.6
89,022	+		GFF6028	0.41	-1.1
89,022	+		GFF6028	0.41	-0.0
89,023	-		GFF6028	0.41	-1.5
89,023	-		GFF6028	0.41	+1.2
89,023	-		GFF6028	0.41	+0.0
89,023	-		GFF6028	0.41	+0.0
89,061	+		GFF6028	0.44	-1.5
89,061	+		GFF6028	0.44	-0.4
89,062	-		GFF6028	0.44	-0.1
89,084	+		GFF6028	0.46	-1.0
89,084	+		GFF6028	0.46	-1.7
89,084	+		GFF6028	0.46	-0.3
89,338	-		GFF6028	0.70	-0.8
89,338	-		GFF6028	0.70	-0.0
89,338	-		GFF6028	0.70	-0.6
89,338	-		GFF6028	0.70	-0.5
89,367	+		GFF6028	0.73	-0.8
89,367	+		GFF6028	0.73	-0.9
89,367	+		GFF6028	0.73	-1.5
89,367	+		GFF6028	0.73	+0.0
89,367	+		GFF6028	0.73	-1.8
89,367	+		GFF6028	0.73	-0.5
89,367	+		GFF6028	0.73	+0.0
89,367	+		GFF6028	0.73	+0.0
89,367	+		GFF6028	0.73	-0.2
89,367	+		GFF6028	0.73	+1.0
89,367	+		GFF6028	0.73	-0.5
89,367	+		GFF6028	0.73	-1.3
89,367	+		GFF6028	0.73	-1.1
89,367	+		GFF6028	0.73	-0.7
89,368	-		GFF6028	0.73	+0.0
89,368	-		GFF6028	0.73	+0.2
89,368	-		GFF6028	0.73	-0.1
89,368	-		GFF6028	0.73	-0.9
89,368	-		GFF6028	0.73	-0.3
89,368	-		GFF6028	0.73	-0.3
89,368	-		GFF6028	0.73	-0.4
89,368	-		GFF6028	0.73	+0.6
89,368	-		GFF6028	0.73	-0.4
89,383	+		GFF6028	0.74	+0.0
89,383	+		GFF6028	0.74	+0.6
89,384	-		GFF6028	0.75	-1.2
89,418	+		GFF6028	0.78	-0.1
89,418	+		GFF6028	0.78	-0.8
89,419	-		GFF6028	0.78	-0.4